genome.fa.s8031.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008031.1 Hibiscus syriacus cultivar Beakdansim tig00110511_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1788856

Tables:   1   2   3   4   5   6   7   8   9   

This is table  2  of  9  ( 1016 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214944--214978	2	17.5	2	100	0	70	51	0	0	48	1.00
217518--217949	54	8.0	54	89	0	648	33	17	17	31	1.93
224664--224727	21	3.0	21	97	0	119	48	23	0	28	1.51
228546--228575	12	2.6	11	90	10	51	56	13	0	30	1.37
231109--231173	33	2.0	33	93	0	112	30	12	26	30	1.92
233523--233569	22	2.1	22	96	0	85	44	8	14	31	1.76
236462--236501	21	1.9	21	100	0	80	47	15	37	0	1.45
242635--242750	45	2.6	45	80	2	117	25	20	9	43	1.82
242684--242916	46	5.1	46	84	3	267	23	22	9	45	1.80
242684--242916	92	2.5	92	83	7	312	23	22	9	45	1.80
242982--243345	68	5.3	68	90	2	550	28	23	14	32	1.94
243549--243886	55	6.1	55	89	2	491	34	19	10	35	1.86
243568--243886	111	2.9	110	90	2	480	34	18	10	36	1.85
243549--243886	166	2.0	165	88	2	500	34	19	10	35	1.86
243854--243918	32	2.0	32	93	0	112	30	13	12	43	1.81
243799--243971	87	2.0	87	91	0	283	33	17	11	37	1.86
243886--244129	55	4.4	55	92	0	398	33	18	12	35	1.88
243743--244030	142	2.0	143	90	2	454	34	18	10	36	1.86
243688--244076	197	2.0	198	91	1	629	33	19	11	35	1.87
244467--244539	19	3.6	20	80	10	85	28	24	15	31	1.95
246943--246986	17	2.4	18	77	11	54	47	0	4	47	1.22
247056--247148	46	2.0	46	85	0	123	43	10	2	44	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253725--253764	18	2.2	18	86	0	53	5	10	5	80	1.02
262245--262292	19	2.5	20	86	13	73	16	41	22	18	1.90
263532--263579	19	2.5	20	82	3	62	52	6	12	29	1.63
266311--266358	23	2.0	24	96	4	89	45	18	18	16	1.85
268063--268096	6	5.7	6	92	0	50	64	0	0	35	0.94
268300--268351	7	7.4	7	76	8	52	78	3	3	13	1.02
268293--268351	21	2.8	21	80	10	66	76	3	5	15	1.10
268342--268433	43	2.1	45	87	4	134	67	5	9	17	1.38
269692--269934	74	3.3	74	89	6	359	43	8	3	45	1.50
269691--269944	36	6.9	36	76	16	222	42	7	3	46	1.48
270625--270994	85	4.4	85	84	2	413	28	15	20	35	1.93
276167--276308	38	3.7	38	79	9	128	72	2	8	16	1.21
276268--276323	23	2.5	23	91	2	87	73	0	5	21	1.03
276211--276325	40	2.9	40	82	10	121	74	1	6	17	1.10
276297--276344	20	2.6	17	81	15	51	79	4	2	14	0.98
277563--277648	41	2.1	41	86	4	120	43	4	4	47	1.44
277672--277973	36	8.1	36	74	17	217	41	8	4	46	1.54
277747--277782	12	3.0	12	100	0	72	33	8	8	50	1.63
277713--277814	45	2.2	48	87	5	147	40	6	4	48	1.52
277781--277977	108	1.8	110	85	4	283	42	8	3	45	1.51
281664--281776	52	2.2	52	91	1	183	36	3	11	48	1.57
281751--281786	17	2.1	17	89	0	54	25	2	2	69	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285069--285117	24	2.0	25	84	4	64	51	14	10	24	1.73
290528--290683	31	5.0	31	92	1	251	20	18	22	38	1.93
295033--295188	31	5.0	31	96	1	269	19	19	23	37	1.94
302882--302933	19	2.8	19	94	2	88	46	7	21	25	1.77
306203--306238	4	9.0	4	100	0	72	50	0	25	25	1.50
306277--306497	44	5.0	44	92	1	354	40	12	21	24	1.88
321421--321507	23	3.7	23	84	6	120	47	1	3	48	1.26
321458--321529	25	2.8	25	80	2	81	45	5	1	47	1.34
321924--321968	21	2.1	21	83	0	54	71	4	2	22	1.15
322416--322471	28	2.1	27	86	6	78	55	5	23	16	1.61
324303--324441	40	3.4	40	71	5	125	20	17	27	35	1.94
324260--324442	83	2.2	83	88	1	260	20	16	28	34	1.94
324614--324656	21	2.0	21	100	0	86	58	0	27	13	1.37
324691--324924	104	2.3	101	77	10	242	38	12	14	34	1.84
327076--327142	25	2.7	25	86	13	95	56	1	5	35	1.33
330042--330127	22	3.9	22	87	0	127	26	19	24	29	1.99
330042--330127	44	2.0	44	92	0	145	26	19	24	29	1.99
332014--332064	3	17.3	3	77	4	50	1	35	1	60	1.19
333533--333569	19	1.9	19	94	0	65	24	24	13	37	1.91
333590--333667	22	3.6	22	80	1	95	28	14	20	37	1.91
333611--333678	22	3.0	21	75	14	66	25	16	20	38	1.92
333590--333678	43	2.0	45	89	8	139	26	15	20	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335742--335800	28	2.1	29	87	9	86	69	3	5	22	1.23
335748--335808	28	2.2	28	85	5	79	68	3	4	22	1.23
336231--336299	29	2.3	29	78	14	70	52	7	20	20	1.70
336512--336607	32	2.9	32	80	11	115	53	4	14	28	1.60
337168--337229	24	2.6	24	84	0	79	14	9	37	38	1.79
337737--337767	2	15.5	2	100	0	62	51	0	0	48	1.00
339063--339182	30	3.9	31	82	7	138	35	20	18	25	1.95
339433--339473	2	20.5	2	100	0	82	48	0	0	51	1.00
345622--345672	26	2.0	25	92	3	84	33	1	1	62	1.17
349394--349437	16	2.6	17	85	7	63	11	13	38	36	1.81
349389--349438	16	2.6	19	73	26	52	12	12	40	36	1.79
349477--349587	32	3.5	32	77	9	93	24	11	23	40	1.88
349456--349589	64	2.1	64	79	9	148	23	12	22	41	1.88
352669--352706	3	12.0	3	89	10	58	63	0	0	36	0.95
352666--352706	16	2.9	13	80	19	55	63	0	0	36	0.95
352666--352706	10	4.2	10	93	6	75	63	0	0	36	0.95
352948--353218	141	1.9	141	88	3	411	24	18	29	27	1.98
354172--354206	16	2.2	16	90	10	54	8	14	0	77	0.99
354183--354222	21	1.9	21	84	0	53	7	12	0	80	0.91
367682--367727	3	15.0	3	84	13	58	69	0	0	30	0.89
367679--367716	10	3.9	10	89	6	60	65	0	0	34	0.93
369138--369295	21	7.8	20	70	7	77	37	24	17	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369263--369456	20	9.6	20	76	8	76	35	25	19	19	1.95
369263--369456	40	4.8	39	82	3	199	35	25	19	19	1.95
369263--369455	60	3.2	60	83	0	251	35	25	19	19	1.95
369594--369638	22	2.1	22	91	4	74	20	42	15	22	1.89
369820--369890	33	2.2	33	92	0	115	11	22	18	47	1.80
369970--370053	20	4.6	20	74	19	76	45	20	23	10	1.82
369982--370057	20	4.2	20	74	22	85	47	18	23	10	1.79
370008--370064	14	3.7	14	75	20	60	43	22	24	8	1.81
369988--370069	33	2.5	33	93	2	137	45	21	24	8	1.80
370075--370192	14	7.1	18	67	25	80	10	24	21	44	1.83
370097--370186	14	5.7	14	74	23	81	8	25	23	42	1.83
370080--370194	33	3.5	33	95	0	212	9	24	20	45	1.81
371846--372219	93	4.1	93	95	3	677	22	12	18	46	1.82
372262--372388	18	7.3	18	72	17	99	44	28	17	9	1.79
372296--372388	33	2.9	32	88	6	134	45	27	18	8	1.78
372384--372501	19	6.8	18	76	18	108	10	20	22	46	1.80
372408--372461	14	3.5	14	75	22	54	11	20	22	46	1.82
372389--372480	33	2.8	32	93	1	148	10	20	21	46	1.81
372452--372517	19	3.4	19	87	6	89	10	16	27	45	1.80
374386--374420	14	2.6	14	90	4	54	31	0	22	45	1.53
374526--374607	20	4.6	18	81	15	100	42	18	24	14	1.87
374636--374909	19	15.4	19	81	15	345	13	21	17	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374614--374881	52	5.0	52	92	4	446	14	22	16	46	1.83
374614--374881	109	2.5	105	91	6	450	14	22	16	46	1.83
376743--376789	24	2.0	24	87	8	69	38	21	14	25	1.92
377450--377836	20	19.5	20	83	7	430	20	18	25	35	1.95
400297--400339	20	2.2	20	86	0	59	39	25	9	25	1.85
411631--412798	232	5.0	233	85	3	1557	32	16	17	34	1.92
411631--412798	463	2.5	464	85	2	1553	32	16	17	34	1.92
412759--412874	42	2.8	41	80	2	142	27	19	22	30	1.98
412705--412874	83	2.0	83	89	0	259	27	20	21	31	1.98
412717--412849	42	3.2	42	78	2	151	27	19	21	32	1.97

Tables:   1   2   3   4   5   6   7   8   9