genome.fa.s8031.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008031.1 Hibiscus syriacus cultivar Beakdansim tig00110511_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1788856

Tables:   1   2   3   4   5   6   7   8   9   

This is table  4  of  9  ( 1016 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
654937--655033	42	2.3	42	91	1	160	41	19	9	29	1.83
655081--655107	6	4.5	6	100	0	54	29	18	0	51	1.46
655599--655646	25	2.0	24	83	4	60	33	4	22	39	1.74
656766--656808	21	2.0	21	86	8	61	27	27	23	20	1.99
663460--663486	14	1.9	14	100	0	54	29	0	7	62	1.22
665042--665074	2	16.5	2	100	0	66	48	0	0	51	1.00
665483--665531	19	2.5	19	83	3	62	30	30	16	22	1.96
665502--665596	40	2.3	41	78	5	95	36	25	12	25	1.91
665565--665650	20	4.2	20	83	4	102	31	25	11	31	1.91
665524--665638	41	2.8	42	79	10	114	34	24	12	28	1.91
666437--666470	12	2.8	12	90	0	50	55	29	0	14	1.40
666596--666649	24	2.2	24	96	0	99	22	22	18	37	1.95
670715--670827	21	5.4	21	84	0	145	22	19	37	21	1.95
670715--670837	42	2.9	42	88	0	174	24	18	36	20	1.95
671185--671224	21	2.0	21	85	5	55	35	35	10	20	1.86
671405--671503	42	2.4	42	87	0	144	17	17	36	29	1.92
673202--673248	22	2.1	22	100	0	94	19	12	44	23	1.85
673482--673528	19	2.4	20	82	7	60	27	17	27	27	1.97
674111--674193	27	3.1	25	78	14	78	44	1	0	54	1.08
674118--674167	23	2.1	23	88	3	73	46	0	0	54	1.00
674155--674222	28	2.4	29	82	5	84	41	1	0	57	1.08
674372--674443	22	2.8	26	74	23	73	50	1	4	44	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
674391--674455	22	2.8	23	81	11	71	49	1	4	44	1.32
676183--676247	29	2.2	29	78	10	71	53	1	13	30	1.49
676979--677018	13	3.2	13	89	7	64	55	0	0	45	0.99
680005--680045	8	5.2	8	82	5	57	34	0	29	36	1.58
680113--680843	126	5.8	126	99	0	1426	22	25	19	32	1.97
681230--681329	34	3.0	33	83	2	128	39	2	4	55	1.30
681849--681942	21	4.5	21	92	5	129	20	26	35	18	1.95
681946--681993	21	2.3	21	85	0	60	22	12	39	25	1.89
683707--683793	31	2.8	31	82	3	86	63	2	0	34	1.07
685926--686257	124	2.7	124	87	3	472	27	15	23	34	1.94
689945--689976	17	1.9	16	93	6	55	37	0	3	59	1.13
690738--690775	18	2.1	18	95	0	67	63	0	2	34	1.09
691254--691362	8	12.0	9	69	22	68	22	1	2	73	1.06
691254--691362	18	6.0	17	72	21	71	22	1	2	73	1.06
691275--691344	29	2.5	27	84	9	79	22	1	2	72	1.05
691283--691366	37	2.3	35	80	17	100	21	2	2	73	1.06
692299--692466	91	1.8	91	80	7	198	43	10	18	27	1.82
694152--694192	18	2.2	18	86	4	55	51	0	2	46	1.14
694893--694954	2	31.0	2	93	0	106	46	0	3	50	1.17
697206--697742	134	4.0	134	83	3	597	32	18	19	30	1.95
698299--698545	50	4.9	50	86	4	313	38	17	21	23	1.93
698298--698653	50	7.3	50	78	10	285	39	16	19	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698517--698674	45	3.5	45	85	4	203	44	15	16	23	1.86
699051--699148	42	2.4	42	85	1	135	31	21	22	24	1.98
699295--699333	20	2.0	20	100	0	78	28	20	25	25	1.99
699295--699348	20	2.7	20	88	0	63	27	20	24	27	1.99
699592--699687	42	2.3	41	82	7	131	32	23	18	25	1.97
709792--710117	162	2.0	163	96	0	600	29	19	18	32	1.96
715290--715327	15	2.5	15	91	0	58	65	0	10	23	1.23
716518--716562	16	2.9	16	86	3	56	31	8	4	55	1.51
717387--717453	27	2.5	27	97	0	125	38	17	16	26	1.91
717505--717545	16	2.6	16	88	3	57	31	19	9	39	1.84
719503--719699	87	2.3	87	93	0	331	45	6	9	39	1.61
725446--725566	45	2.7	44	81	12	131	34	10	24	29	1.89
726025--726257	26	10.0	25	65	21	130	45	10	19	24	1.81
726027--726170	71	2.0	72	91	1	236	45	11	19	24	1.83
726086--726340	46	5.6	46	86	4	338	44	9	20	25	1.81
732430--732506	25	3.3	25	70	17	83	31	12	25	29	1.93
732430--732529	45	2.2	45	89	3	148	35	13	25	27	1.92
733015--733239	46	4.9	46	90	2	328	44	7	22	25	1.79
733062--733304	112	2.2	109	83	9	294	43	8	22	25	1.81
733161--733300	66	2.1	66	95	0	253	42	10	22	24	1.85
733227--733319	46	2.0	46	93	0	159	43	10	21	24	1.84
733115--733319	112	1.8	112	93	0	356	43	9	21	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
762123--762147	13	1.9	13	100	0	50	88	0	12	0	0.53
779813--779856	10	4.4	10	88	0	61	61	13	11	13	1.57
779935--779977	21	2.0	21	82	8	52	39	0	11	48	1.40
785798--785845	19	2.5	19	96	0	87	25	4	2	68	1.18
785851--785960	39	2.8	39	86	9	136	36	17	0	46	1.48
786459--786941	182	2.7	182	93	0	824	42	15	16	26	1.88
788895--788950	24	2.4	23	82	8	69	42	0	1	55	1.10
789229--789261	15	2.2	15	94	0	57	18	6	60	15	1.54
789344--789387	21	2.1	21	95	0	79	40	11	34	13	1.81
789421--789487	33	2.0	33	100	0	134	28	0	47	23	1.52
789672--789739	18	3.8	18	96	0	118	58	0	39	1	1.07
791177--791231	19	2.6	21	81	16	60	63	0	3	32	1.12
791327--791379	12	4.0	12	73	21	52	39	1	3	54	1.29
792102--792144	21	2.0	22	86	4	61	30	4	65	0	1.13
792371--792438	30	2.2	31	86	2	93	33	19	19	27	1.96
793179--793226	3	15.3	3	80	4	51	33	2	0	64	1.05
793192--793229	12	3.2	12	92	0	58	31	0	0	68	0.90
795354--795395	20	2.1	20	100	0	84	19	23	47	9	1.78
795360--795405	20	2.3	20	88	0	65	23	28	43	4	1.73
795655--795692	16	2.3	16	83	16	51	7	13	2	76	1.11
797680--797759	36	2.2	37	91	8	128	75	6	15	3	1.15
797717--797763	15	3.2	14	84	6	58	76	6	14	2	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
798776--798864	32	2.8	32	83	6	117	29	15	23	31	1.95
801030--801070	3	13.3	3	94	5	73	31	0	0	68	0.90
802403--802427	13	1.9	13	100	0	50	12	0	0	88	0.53
805258--805300	20	2.2	20	86	0	59	34	16	13	34	1.88
807912--807952	21	2.0	21	90	0	64	63	0	21	14	1.30
815474--815513	20	2.0	20	85	0	53	32	17	15	35	1.91
821374--821398	2	12.5	2	100	0	50	48	0	0	52	1.00
823664--823715	19	2.9	17	71	20	52	28	1	23	46	1.63
825730--825767	20	1.9	20	88	0	58	21	26	10	42	1.85
829191--829262	24	2.9	25	80	11	78	36	5	1	56	1.31
831311--831398	36	2.4	37	86	3	124	32	17	10	39	1.83
831535--831759	67	3.3	68	79	3	242	31	16	12	40	1.85
831979--832228	137	1.8	137	86	3	360	30	30	15	23	1.95
835231--835292	29	2.2	29	91	2	99	41	30	4	22	1.74
836588--836946	54	6.6	54	83	4	420	29	7	18	44	1.78
836638--836970	161	2.1	160	83	6	386	29	7	19	44	1.78
837987--838021	18	1.9	18	88	0	52	45	2	5	45	1.41
839227--839268	18	2.3	18	87	0	57	16	16	30	35	1.92
839345--839397	27	1.9	28	88	11	83	50	3	0	45	1.19
839349--839405	27	2.1	27	78	18	66	50	3	0	45	1.18
839811--839985	89	2.0	89	90	4	282	29	18	17	34	1.94
840011--840049	20	2.0	20	89	0	60	43	23	12	20	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
840037--840185	20	7.5	19	76	6	118	30	19	22	27	1.98
840888--841114	65	3.5	65	95	0	400	28	27	9	34	1.88
848626--848660	18	1.9	18	94	0	61	11	11	40	37	1.77
848736--848808	19	3.7	19	72	15	67	54	2	0	42	1.14
852217--852287	31	2.3	31	85	4	99	36	15	18	29	1.92
853108--853226	57	2.1	56	80	12	127	23	8	8	59	1.54
869732--869776	20	2.3	20	85	11	58	31	13	15	40	1.86
870788--870840	14	3.8	13	81	13	54	81	3	11	3	0.96
870802--870861	23	2.4	25	83	10	79	78	3	15	3	1.01
870781--870846	34	2.0	34	84	3	89	78	4	13	3	1.02

Tables:   1   2   3   4   5   6   7   8   9