genome.fa.s8031.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008031.1 Hibiscus syriacus cultivar Beakdansim tig00110511_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1788856

Tables:   1   2   3   4   5   6   7   8   9   

This is table  5  of  9  ( 1016 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
870788--870848	15	4.3	14	75	10	52	80	3	13	3	0.96
871864--871942	32	2.5	32	83	4	106	29	12	24	34	1.92
872272--872444	44	4.2	41	66	17	115	31	26	19	23	1.98
872220--872925	124	5.6	125	78	8	672	28	26	18	26	1.98
872223--872925	249	2.8	248	81	8	726	28	26	18	26	1.98
872680--872828	38	3.5	44	71	16	125	26	27	18	28	1.98
884130--884167	19	2.0	19	94	0	67	36	28	15	18	1.92
888698--888735	19	2.0	19	100	0	76	36	31	15	15	1.90
889184--889233	23	2.2	23	88	0	73	42	6	10	42	1.63
895799--895835	19	1.9	19	89	10	58	59	0	10	29	1.31
896242--896292	23	2.2	23	89	0	75	43	5	9	41	1.62
908529--908608	18	4.4	18	95	0	142	17	50	21	11	1.77
911017--911155	24	5.8	24	92	3	217	23	15	19	41	1.90
913255--913318	18	3.6	18	86	0	101	17	46	21	14	1.83
913295--913324	13	2.3	13	94	0	51	16	43	23	16	1.87
913277--913344	31	2.1	33	84	10	88	17	38	23	20	1.93
915770--915908	24	5.8	24	90	3	208	25	12	19	41	1.87
916953--917071	35	3.3	36	84	5	143	43	18	5	32	1.72
917004--917063	21	3.2	21	63	30	53	41	21	5	31	1.75
921521--921637	35	3.2	36	87	6	166	44	17	5	32	1.71
922705--922737	15	2.2	16	89	10	52	48	0	6	45	1.27
925903--926215	161	1.9	160	92	3	531	27	22	16	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
928702--928742	21	2.0	21	85	0	55	9	48	17	24	1.76
929695--929734	21	1.9	21	85	10	55	32	5	0	62	1.17
929694--929740	21	2.2	20	79	17	51	27	4	2	65	1.22
929964--930007	23	1.9	23	81	9	54	36	4	0	59	1.18
930109--930148	8	4.8	9	84	9	50	45	0	0	55	0.99
934733--934867	72	1.9	72	90	3	218	28	19	16	35	1.93
938897--939033	54	2.5	54	80	2	159	39	13	17	29	1.88
940201--940584	45	8.5	45	89	0	570	23	22	19	34	1.97
940125--940267	76	1.9	74	91	2	232	24	20	20	34	1.97
940201--940686	135	3.7	135	85	5	628	24	22	19	34	1.97
940592--940686	45	2.1	45	88	0	136	27	21	18	32	1.97
940839--940912	3	26.7	3	74	15	54	37	0	0	62	0.96
941063--941122	21	2.9	21	92	0	102	16	48	15	20	1.81
943258--943442	78	2.4	78	89	0	282	33	12	22	31	1.91
943471--943511	22	1.9	22	85	5	57	34	9	19	36	1.85
947121--947211	29	3.1	29	78	9	103	19	10	7	61	1.53
947120--947213	30	3.2	30	81	3	118	20	10	7	61	1.52
949147--949205	30	2.0	30	93	0	100	11	13	13	61	1.58
951115--951182	8	8.6	8	80	11	61	58	0	1	39	1.07
951117--951188	19	3.8	19	83	12	94	58	0	1	40	1.07
951115--951171	25	2.3	25	91	8	91	59	0	0	40	0.97
951115--951185	3	23.7	3	75	16	67	59	0	1	39	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951110--951188	21	3.7	24	76	19	61	56	0	2	40	1.12
951333--951375	19	2.2	20	83	4	52	30	27	20	20	1.98
951323--951608	118	2.4	119	92	1	459	34	17	15	32	1.92
957990--958080	45	2.0	47	86	4	132	30	17	15	36	1.91
960511--960585	22	3.3	24	83	12	88	58	2	1	37	1.20
960525--960585	16	3.5	17	82	14	72	59	0	1	39	1.08
960511--960585	8	9.9	8	73	23	65	58	2	1	37	1.20
960515--960585	11	6.0	11	79	14	70	59	2	1	36	1.21
960511--960583	14	4.9	14	80	12	67	58	2	1	36	1.21
961104--961146	12	3.3	12	79	17	50	16	18	13	51	1.77
962170--962233	32	2.0	32	90	0	101	28	14	26	31	1.95
962314--962463	36	4.1	37	81	9	148	29	20	12	38	1.88
962564--962623	29	2.0	30	84	9	79	26	15	15	43	1.85
962589--962795	65	3.2	66	77	10	185	26	17	14	42	1.87
962830--963340	131	3.9	129	80	6	553	27	33	15	22	1.95
965791--965852	27	2.2	28	78	13	74	59	11	17	11	1.60
972539--972615	29	2.6	29	82	8	93	18	10	9	62	1.53
972539--972618	30	2.7	30	88	1	108	18	10	10	61	1.55
975391--975596	103	2.0	103	96	0	376	46	17	14	22	1.84
975593--975784	99	1.9	98	90	1	303	44	17	22	16	1.87
981443--981547	52	2.0	52	96	0	192	40	18	13	28	1.88
1002630--1002672	15	2.9	15	80	13	61	39	0	2	58	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1004434--1004477	21	2.1	21	91	0	70	27	18	25	29	1.98
1007799--1007860	19	3.4	19	91	6	101	33	4	16	45	1.68
1011187--1011275	3	29.3	3	79	6	99	59	1	0	39	1.05
1011513--1011600	34	2.5	35	85	7	117	19	18	10	52	1.73
1011548--1011894	109	3.2	109	79	10	418	29	17	14	38	1.89
1011802--1011967	72	2.3	73	88	4	248	32	14	16	36	1.89
1011748--1012077	182	1.8	182	89	5	524	30	16	15	37	1.90
1011878--1013342	109	13.5	113	90	7	2344	27	16	16	39	1.90
1011878--1013342	220	6.7	226	90	7	2380	27	16	16	39	1.90
1013738--1013788	22	2.3	22	93	0	84	37	15	11	35	1.84
1014158--1014355	53	3.8	53	84	5	235	25	21	15	37	1.92
1027852--1027890	21	1.9	20	84	5	51	35	20	15	28	1.93
1038874--1038904	16	2.0	16	93	6	55	32	19	3	45	1.66
1043972--1044178	55	3.8	55	89	1	301	32	20	18	28	1.96
1044547--1044751	94	2.2	95	84	5	265	27	24	16	31	1.96
1044613--1044657	22	2.0	23	86	4	65	26	31	13	28	1.94
1059719--1059772	28	2.0	27	85	7	74	25	24	20	29	1.99
1065976--1066031	22	2.6	22	81	13	73	32	17	25	25	1.97
1066419--1066462	2	22.0	2	100	0	88	50	0	0	50	1.00
1066491--1066894	55	7.3	55	90	0	601	29	20	19	31	1.97
1070897--1072860	4	494.8	4	98	1	3796	50	25	0	24	1.50
1073732--1073775	16	3.1	14	78	18	54	4	0	13	81	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1078034--1078059	8	3.2	8	100	0	52	38	26	34	0	1.57
1079290--1079327	2	19.0	2	100	0	76	50	0	0	50	1.00
1079374--1079516	5	28.0	5	69	19	91	41	1	2	55	1.20
1079384--1079516	16	9.2	15	75	16	79	41	1	1	55	1.18
1079379--1079516	21	6.7	21	71	19	96	41	1	2	55	1.21
1079722--1079781	28	2.1	28	87	6	86	35	1	1	61	1.16
1079730--1079794	12	5.0	12	79	20	69	33	3	0	63	1.10
1080869--1080897	13	2.3	13	94	5	51	20	0	3	75	0.94
1080871--1080923	22	2.4	22	84	9	63	20	3	3	71	1.17
1089805--1089862	22	2.6	23	76	15	68	36	0	20	43	1.52
1091731--1091775	19	2.4	19	96	0	81	37	8	28	24	1.86
1094322--1094379	22	2.6	23	76	15	68	36	0	20	43	1.52
1094624--1094658	17	2.0	18	88	5	54	54	5	14	25	1.62
1094695--1094719	2	12.5	2	100	0	50	52	0	0	48	1.00
1095097--1095149	23	2.2	24	83	6	63	24	20	22	32	1.98
1103954--1104309	170	2.1	170	88	2	529	35	21	14	28	1.93
1104586--1104691	5	21.0	5	74	19	87	35	0	3	59	1.22
1104620--1104709	8	11.5	8	82	14	100	33	1	1	64	1.08
1104609--1104697	3	31.3	3	74	22	77	34	0	2	62	1.07
1104630--1104717	12	7.5	11	78	16	79	31	2	0	65	1.05
1106267--1106319	2	27.0	2	96	3	99	49	0	0	50	1.00
1113728--1113768	2	21.0	2	95	5	75	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1120674--1120718	19	2.4	19	100	0	90	40	4	26	28	1.75
1120810--1120862	23	2.3	24	75	12	67	15	20	43	20	1.88
1135445--1135504	31	2.0	31	83	9	79	31	23	8	36	1.84
1147245--1147303	28	2.1	28	93	0	100	22	10	45	22	1.81
1147256--1147315	28	2.1	28	84	0	75	21	10	45	23	1.82
1147751--1147783	3	11.7	3	87	12	52	66	0	0	33	0.92
1147970--1148294	55	5.9	55	87	1	436	29	24	15	31	1.95
1147970--1148289	166	1.9	165	87	1	471	29	24	15	31	1.95
1148202--1149422	54	23.6	51	77	9	1029	23	25	19	32	1.98
1148245--1149418	103	11.3	104	83	7	1325	23	25	19	31	1.98

Tables:   1   2   3   4   5   6   7   8   9