genome.fa.s8031.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008031.1 Hibiscus syriacus cultivar Beakdansim tig00110511_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1788856

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1016 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1666314--1666360	21	2.2	21	100	0	94	27	31	19	21	1.97
1667027--1667146	40	3.0	40	72	10	109	31	21	13	33	1.92
1667119--1667166	18	2.5	19	80	10	53	29	20	14	35	1.93
1667937--1667970	12	2.8	12	90	0	50	55	29	0	14	1.40
1668090--1668149	24	2.5	24	91	0	93	25	16	18	40	1.91
1670648--1670722	20	3.8	20	89	0	105	18	18	22	40	1.92
1670738--1670781	20	2.2	20	91	0	70	18	15	25	40	1.90
1670905--1670938	13	2.5	14	95	4	61	55	14	0	29	1.40
1672188--1672300	21	5.4	21	74	4	93	24	20	34	20	1.96
1672188--1672310	42	3.0	41	85	1	147	26	18	34	20	1.95
1672622--1672692	21	3.4	21	71	13	65	33	36	9	19	1.85
1674626--1674710	21	4.0	21	95	0	143	38	15	23	22	1.92
1675994--1676020	4	6.8	4	100	0	54	0	22	0	77	0.76
1676670--1676866	51	4.1	49	78	9	190	27	12	11	48	1.76
1685018--1685050	11	2.8	12	90	4	50	42	15	3	39	1.62
1696515--1696569	20	2.8	20	91	2	85	1	18	32	47	1.59
1712755--1712800	18	2.6	18	89	3	67	28	28	8	34	1.87
1721478--1721565	29	2.9	30	88	8	126	43	9	13	34	1.76
1726284--1726336	21	2.5	21	90	0	79	30	9	11	49	1.70
1730737--1730762	2	13.0	2	100	0	52	50	0	0	50	1.00
1733711--1733759	21	2.3	21	100	0	98	32	12	28	26	1.92
1735944--1736294	59	5.9	59	88	2	497	28	20	13	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1736748--1736783	19	1.9	18	88	5	54	22	30	16	30	1.96
1739871--1739906	16	2.2	16	100	0	72	25	22	25	27	2.00
1741891--1742345	55	8.4	54	85	5	578	27	19	19	34	1.96
1741891--1742345	109	4.2	109	89	3	650	27	19	19	34	1.96
1742765--1742814	19	2.5	20	83	3	66	22	30	16	32	1.95
1747022--1747056	12	3.0	11	88	12	52	11	2	0	85	0.69
1747914--1747951	19	2.1	19	85	9	53	47	13	23	15	1.81
1753749--1753924	95	1.9	94	86	1	253	36	15	22	25	1.94
1753748--1753963	95	2.3	95	82	4	240	35	15	23	25	1.94
1754425--1754548	34	3.6	34	71	12	108	35	10	27	26	1.89
1754529--1754673	45	3.5	45	69	21	143	35	11	25	27	1.90
1754370--1754804	157	2.8	156	86	4	580	37	11	24	26	1.89
1754472--1754804	79	4.2	79	88	0	488	36	11	24	27	1.90
1756344--1756845	55	9.3	55	80	8	516	27	19	19	33	1.96
1756344--1756845	109	4.7	109	83	5	612	27	19	19	33	1.96
1756344--1756839	155	3.1	159	80	9	537	28	19	19	33	1.96
1757187--1757238	19	2.5	22	77	20	58	30	21	17	30	1.96
1759727--1759762	18	2.0	18	94	0	63	19	5	41	33	1.75
1760202--1760324	22	5.7	22	84	3	133	25	18	20	35	1.95
1760199--1760324	44	2.9	44	83	2	157	25	19	19	35	1.95
1763736--1763818	41	2.0	41	85	0	112	31	16	21	30	1.96
1763992--1764016	13	1.9	13	100	0	50	44	0	16	40	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1765436--1765613	90	2.0	89	84	3	232	40	22	8	28	1.84
1765743--1765777	11	3.3	11	84	8	54	40	8	11	40	1.72
1772724--1773145	2	221.5	2	72	20	293	40	2	4	52	1.34
1772722--1773230	48	10.5	50	72	20	288	40	1	4	53	1.32
1772724--1773239	15	31.1	16	70	20	89	40	1	4	53	1.32
1777256--1777296	21	2.0	21	95	0	73	29	41	14	14	1.86
1780720--1780766	21	2.2	21	92	0	76	27	25	4	42	1.73
1784725--1784898	5	33.8	5	73	17	101	38	0	4	56	1.22
1784721--1784887	12	14.3	12	72	20	101	38	0	4	56	1.23
1784723--1784891	44	3.8	42	76	14	128	38	0	4	56	1.23
1784813--1784891	3	27.3	3	76	21	80	36	0	0	63	0.95
1784783--1784899	9	13.1	9	75	20	72	36	0	1	61	1.06

Tables:   1   2   3   4   5   6   7   8   9

The End!