genome.fa.s8062.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008062.1 Hibiscus syriacus cultivar Beakdansim tig00110557_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2089609

Tables:   1   2   3   4   5   6   7   8   9   

This is table  4  of  9  ( 995 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
732046--732085	21	1.9	21	89	0	62	25	40	25	10	1.86
737892--738072	48	3.7	48	77	7	161	24	3	48	23	1.68
738039--738089	24	2.1	24	88	0	75	29	3	41	25	1.73
738054--738099	24	1.9	24	81	0	56	34	4	39	21	1.73
740836--740873	14	2.8	14	88	4	51	47	7	15	28	1.74
741052--741148	16	5.9	16	74	15	74	48	0	1	50	1.07
741151--741183	15	2.3	15	89	5	50	51	0	3	45	1.16
741278--741352	37	2.0	37	85	10	100	52	1	0	46	1.09
741356--741402	24	2.0	24	82	0	58	51	4	2	42	1.33
758170--758201	14	2.3	14	94	0	55	34	9	12	43	1.75
759744--759771	2	14.0	2	100	0	56	50	0	0	50	1.00
764465--764568	39	2.7	37	76	4	91	37	11	4	46	1.62
770708--770791	30	2.8	30	78	7	80	42	22	9	25	1.83
773242--773314	29	2.5	29	88	0	101	17	26	36	19	1.94
780762--780822	32	1.9	32	86	0	86	14	13	27	44	1.83
780819--780929	47	2.3	47	83	6	125	17	14	20	47	1.82
782090--782129	21	1.9	21	84	0	53	60	0	5	35	1.19
786069--786108	7	5.7	7	100	0	80	15	0	0	85	0.61
797314--797416	34	2.9	34	85	8	118	14	30	21	33	1.93
799154--799183	15	2.0	15	93	0	51	76	6	3	13	1.11
803141--803181	3	13.3	3	84	5	55	34	4	0	60	1.18
813287--813349	24	2.6	25	75	25	80	36	15	17	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
826478--826640	63	2.6	63	84	1	191	31	21	20	25	1.98
827163--827262	22	4.7	22	85	9	145	16	25	32	27	1.96
827185--827277	40	2.3	40	94	0	159	15	23	33	27	1.95
841565--841610	22	2.1	22	88	4	67	45	0	15	39	1.46
854516--854558	22	2.0	22	90	4	70	55	2	0	41	1.12
864796--864830	18	1.9	18	100	0	70	34	17	28	20	1.95
867238--867279	23	1.9	23	85	9	61	28	14	35	21	1.92
874352--874391	22	1.9	20	85	10	53	17	12	2	67	1.33
877141--877292	79	1.9	79	89	0	223	44	5	8	40	1.59
877730--877822	47	2.0	46	85	2	123	33	0	20	46	1.51
878027--878519	166	2.9	168	93	4	837	34	9	7	48	1.65
878748--878858	35	3.1	35	63	21	86	36	12	5	45	1.65
882859--882927	35	2.0	32	94	5	102	42	23	15	18	1.89
885875--885996	51	2.4	51	79	2	129	45	4	6	43	1.51
886403--886445	23	1.9	22	86	13	61	51	2	9	37	1.47
895775--895806	14	2.3	14	100	0	64	21	6	28	43	1.77
898305--898462	21	7.8	20	72	7	86	38	24	17	18	1.93
898430--898658	20	11.4	20	81	5	230	37	25	17	19	1.94
899351--899397	24	2.0	24	87	8	69	25	14	21	38	1.92
899572--899596	12	2.1	12	100	0	50	72	0	28	0	0.86
901861--902026	33	4.8	34	82	10	192	46	19	21	13	1.83
901880--902130	53	4.8	49	80	15	240	46	17	22	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
901894--902127	72	3.3	72	80	8	286	46	17	22	14	1.83
902038--902092	14	3.6	14	73	21	56	45	20	23	10	1.82
902019--902112	33	2.8	33	96	1	170	45	17	23	13	1.84
901924--902130	86	2.3	89	92	4	348	45	16	23	14	1.83
902107--902222	53	2.2	52	86	3	160	18	23	18	38	1.93
902145--902232	19	4.8	19	82	14	123	13	22	15	47	1.81
902323--902359	14	2.6	14	91	0	65	45	21	0	32	1.52
904279--904414	19	7.4	19	75	9	111	47	25	16	11	1.80
904354--904432	33	2.4	33	91	0	122	45	21	20	12	1.84
904428--904519	19	5.4	18	72	24	74	8	16	28	46	1.76
904444--904502	14	3.9	14	76	20	64	6	16	28	47	1.72
904428--904551	33	3.7	33	90	1	176	9	16	27	45	1.79
904477--904533	14	3.7	14	72	20	51	8	22	24	43	1.81
904649--904962	93	3.4	93	97	0	587	44	18	13	22	1.85
906647--906730	40	2.1	40	86	2	114	47	16	23	11	1.80
906647--906760	19	6.1	19	73	15	94	45	18	23	12	1.83
906783--906856	21	3.5	21	80	7	96	14	20	17	47	1.83
906936--907006	33	2.2	33	92	5	117	47	16	22	12	1.80
907390--907578	20	9.4	20	85	5	238	19	18	26	35	1.95
907789--907844	3	18.7	3	100	0	112	33	0	0	66	0.92
908967--909190	39	5.7	39	88	2	290	37	16	30	14	1.89
908964--909287	78	4.2	78	78	4	244	36	18	29	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
908987--909313	117	2.8	117	78	3	275	36	19	28	16	1.93
909028--909313	39	7.3	39	85	2	191	34	18	29	17	1.94
909409--909599	39	4.9	38	82	3	193	37	16	21	24	1.94
909980--910067	12	7.3	12	68	0	68	46	12	35	5	1.65
909970--910068	24	4.1	24	90	2	146	46	13	35	5	1.65
909970--910247	48	5.5	48	72	13	132	46	14	32	6	1.69
910112--910247	24	5.6	25	75	7	147	46	15	31	6	1.71
910185--910287	12	8.6	12	69	0	62	45	15	33	5	1.70
910196--910296	36	2.8	36	83	0	103	46	14	32	5	1.69
910232--910287	24	2.3	24	84	0	76	44	14	35	5	1.68
911358--911388	15	2.1	15	100	0	62	29	19	19	32	1.96
914535--914616	21	4.0	20	69	12	67	24	24	17	34	1.96
914646--914760	20	5.7	20	78	6	97	33	26	16	23	1.96
914643--914780	41	3.4	41	78	2	161	35	25	15	23	1.94
915253--915311	20	3.0	20	87	0	73	15	18	22	44	1.87
915448--915502	25	2.2	24	78	15	58	20	9	18	52	1.71
916631--916678	18	2.7	18	93	0	87	27	45	12	14	1.81
917213--917278	20	3.4	19	77	6	69	40	24	18	16	1.90
917268--917326	14	3.9	14	76	20	64	49	23	16	10	1.77
917252--917343	33	2.8	33	96	0	166	48	21	17	11	1.79
917252--917348	19	5.6	19	71	22	88	47	21	18	12	1.81
917355--917434	33	2.4	33	89	0	106	15	17	18	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
917408--917493	40	2.2	40	85	2	111	16	23	23	37	1.94
917428--917493	20	3.3	20	95	0	114	15	24	25	34	1.94
917439--917519	20	4.1	19	85	6	81	20	18	25	34	1.96
917428--917513	40	2.2	40	85	4	111	17	20	26	34	1.95
917859--917978	42	2.9	41	81	2	114	24	36	16	22	1.94
919359--919397	14	2.8	14	84	0	51	35	0	17	46	1.49
919545--919611	20	3.3	20	68	12	64	16	20	22	40	1.91
920697--920750	24	2.2	24	90	0	81	22	16	20	40	1.91
920925--920949	12	2.1	12	100	0	50	72	0	28	0	0.86
923150--923184	14	2.6	14	86	4	54	34	20	20	25	1.96
923164--923237	33	2.2	33	88	4	105	17	22	20	39	1.92
923351--923387	14	2.6	15	87	12	60	48	21	0	29	1.50
924739--924805	21	3.2	21	68	4	55	19	20	35	23	1.95
925079--925264	91	2.0	94	91	5	308	48	17	11	22	1.79
926895--926950	14	3.6	14	76	21	58	41	25	23	10	1.86
926871--926969	33	3.0	33	93	1	162	41	23	24	11	1.86
926846--926991	19	8.1	18	75	18	119	43	20	23	12	1.85
926987--927034	20	2.5	19	77	12	53	10	16	27	45	1.80
927539--927605	20	3.4	20	84	10	68	25	16	22	35	1.94
927572--927645	20	3.7	20	89	3	121	20	21	18	39	1.93
927574--927660	41	2.1	41	87	4	122	24	20	18	36	1.95
927653--927708	20	2.8	20	91	0	94	41	21	19	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
927737--927788	20	2.5	21	87	3	70	21	23	17	38	1.93
927635--927830	21	9.5	21	76	5	105	33	18	20	27	1.96
929622--929670	23	2.1	23	96	0	89	38	6	34	20	1.77
930811--930862	3	17.3	3	100	0	104	32	0	0	67	0.91
937532--937585	19	2.8	19	77	20	58	51	0	0	48	1.00
937531--937572	21	2.0	22	85	4	59	47	0	0	52	1.00
937538--937582	21	2.3	19	81	11	54	57	0	0	42	0.98
949957--950032	35	2.2	35	92	0	125	39	23	1	35	1.63
950429--950676	130	1.9	130	90	0	397	35	16	13	34	1.87
951144--951177	16	2.0	18	88	11	54	64	5	2	26	1.30

Tables:   1   2   3   4   5   6   7   8   9