genome.fa.s8062.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008062.1 Hibiscus syriacus cultivar Beakdansim tig00110557_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2089609

Tables:   1   2   3   4   5   6   7   8   9   

This is table  6  of  9  ( 995 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1213371--1213398	2	14.0	2	100	0	56	0	50	0	50	1.00
1223980--1224056	37	2.1	37	90	0	118	41	10	3	44	1.57
1224150--1224189	21	1.9	21	85	10	55	57	0	2	40	1.12
1224452--1224497	2	23.0	2	100	0	92	50	0	0	50	1.00
1228597--1228703	19	5.6	18	69	21	67	45	0	2	51	1.15
1228609--1228688	42	1.9	42	89	0	124	46	0	2	51	1.14
1234572--1234633	6	10.3	6	82	0	52	16	46	3	33	1.63
1234575--1234633	15	3.9	15	88	0	91	16	45	3	33	1.64
1234572--1234633	30	2.1	30	100	0	124	16	46	3	33	1.63
1234575--1234666	9	9.6	9	73	13	58	19	40	3	36	1.68
1234584--1234669	6	14.3	6	75	4	57	20	38	3	37	1.70
1236889--1236975	29	2.9	29	76	13	86	45	8	2	43	1.46
1237473--1237550	31	2.5	31	82	0	93	34	11	25	28	1.91
1243339--1243366	6	4.7	6	100	0	56	0	46	35	17	1.49
1247223--1247284	5	10.3	6	75	20	51	33	0	4	61	1.17
1247230--1247284	24	2.3	24	84	3	85	32	0	5	61	1.19
1248865--1248896	2	16.0	2	100	0	64	50	0	0	50	1.00
1249430--1249562	9	14.3	9	68	20	62	19	8	1	70	1.20
1249461--1249512	23	2.3	23	83	12	63	23	7	1	67	1.27
1249474--1249541	29	2.4	29	77	20	72	20	5	1	72	1.14
1249497--1249574	34	2.3	34	82	8	88	19	8	0	71	1.11
1250078--1250114	12	3.1	12	96	0	65	37	0	21	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1251126--1251197	37	1.9	37	91	5	119	29	15	18	37	1.91
1260047--1260107	23	2.9	21	82	7	70	22	34	24	18	1.96
1260090--1260127	20	1.9	20	88	0	58	26	36	26	10	1.89
1265614--1265671	17	3.2	17	72	13	53	58	1	6	32	1.35
1265754--1265794	21	2.0	21	85	9	57	70	0	7	21	1.11
1267254--1267343	21	4.3	21	97	0	153	28	30	21	20	1.98
1267404--1267507	21	4.9	20	71	15	59	23	21	22	33	1.97
1267411--1267507	42	2.3	42	94	0	176	23	20	21	34	1.97
1268492--1268550	27	2.2	27	84	6	75	11	20	22	45	1.83
1272818--1272874	6	9.8	6	78	16	50	80	0	14	5	0.87
1272833--1272886	26	2.2	25	83	9	67	83	1	7	7	0.88
1272839--1272891	26	2.0	27	85	7	74	79	1	7	11	1.01
1272813--1272892	12	6.4	13	76	15	62	75	3	12	8	1.17
1274286--1274354	36	1.9	36	85	11	97	52	0	1	46	1.09
1274397--1274446	19	2.7	20	73	17	54	44	4	2	50	1.32
1275424--1275641	109	2.0	109	90	0	346	40	12	10	36	1.78
1278848--1278921	29	2.5	31	77	8	89	35	12	18	33	1.88
1278848--1278948	31	3.3	31	78	8	91	36	10	16	35	1.84
1282433--1282604	64	2.6	65	92	3	276	33	11	7	47	1.68
1282437--1282621	65	2.9	65	91	3	293	31	10	10	47	1.72
1282570--1282673	47	2.2	47	85	0	136	27	10	13	48	1.75
1283094--1283125	15	2.1	15	100	0	64	18	18	34	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1284960--1285129	85	2.0	85	92	0	286	30	15	18	35	1.92
1287133--1287172	18	2.2	18	86	0	53	72	2	0	25	0.97
1287598--1287627	2	14.5	2	93	6	51	46	3	0	50	1.18
1289281--1289323	16	2.6	17	77	3	52	58	0	0	41	0.98
1289692--1289752	32	1.9	32	86	0	86	55	6	8	29	1.54
1289706--1289769	32	2.0	32	81	0	74	60	7	7	23	1.50
1297885--1297964	30	2.7	31	81	16	98	76	6	12	5	1.14
1298554--1298604	22	2.3	22	93	0	84	37	25	11	25	1.90
1299455--1299559	36	2.9	36	88	2	156	24	23	12	39	1.89
1299455--1299564	37	3.0	37	87	2	159	26	23	11	38	1.89
1299598--1299655	15	3.5	15	72	19	53	18	22	15	43	1.88
1299730--1299800	35	2.0	36	83	2	90	29	22	11	36	1.89
1300357--1301122	105	7.3	106	88	2	1039	33	25	18	23	1.97
1310621--1310673	2	26.5	2	100	0	106	50	0	0	49	1.00
1365973--1366002	14	2.1	15	93	6	53	76	0	0	23	0.78
1365972--1366028	23	2.5	23	74	25	66	70	3	0	26	1.03
1366015--1366069	24	2.4	23	81	6	58	63	7	0	29	1.21
1367772--1367839	19	3.6	18	71	13	57	55	2	2	38	1.30
1368751--1368782	8	4.0	8	95	0	55	37	15	34	12	1.85
1369292--1369366	38	2.0	36	82	10	89	49	5	0	45	1.25
1370227--1370306	40	1.9	41	85	7	108	42	12	6	38	1.68
1371028--1371061	16	2.1	16	88	0	50	50	0	2	47	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1371101--1371137	15	2.4	16	86	13	51	32	2	5	59	1.34
1371741--1371800	16	3.8	16	97	0	111	30	28	20	21	1.98
1372275--1372350	35	2.2	35	90	0	116	36	1	22	39	1.63
1374652--1374676	2	12.5	2	100	0	50	0	48	0	52	1.00
1376834--1376914	31	2.6	31	90	5	128	33	17	11	38	1.85
1393536--1393958	212	2.0	212	99	0	837	36	15	25	22	1.93
1394931--1394964	13	2.7	13	90	4	52	44	0	0	55	0.99
1403199--1404362	580	2.0	580	100	0	2328	34	21	17	26	1.95
1408891--1408955	29	2.2	29	83	8	78	47	9	0	43	1.35
1408920--1409242	34	9.2	36	71	18	193	43	8	4	44	1.52
1409010--1409185	73	2.4	71	82	8	192	42	8	3	46	1.51
1409010--1409236	107	2.1	109	83	8	284	42	8	3	45	1.51
1414862--1415013	83	1.9	82	91	4	254	42	5	6	45	1.54
1420848--1420897	21	2.4	21	89	0	82	32	20	12	36	1.89
1424602--1424945	182	1.9	182	91	3	566	46	8	2	42	1.48
1425862--1425920	29	2.0	29	96	0	109	15	35	27	22	1.94
1426348--1426390	20	2.2	20	100	0	86	34	4	9	51	1.55
1427197--1427240	23	1.9	23	100	0	88	56	4	0	38	1.20
1434226--1434285	5	12.4	5	77	10	54	75	5	0	20	0.99
1434221--1434301	4	19.2	4	72	25	53	75	3	0	20	0.96
1434233--1434298	25	2.6	26	82	4	89	72	4	0	22	1.02
1434840--1434865	9	2.9	9	100	0	52	92	0	0	7	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1435004--1435139	37	3.8	35	85	5	166	29	14	13	41	1.85
1435038--1435138	34	2.9	35	91	8	161	27	14	13	43	1.84
1435687--1436242	105	5.3	105	88	3	701	22	17	25	33	1.96
1436846--1437013	68	2.5	67	86	3	232	38	10	21	30	1.86
1436927--1437169	102	2.4	101	87	1	351	39	13	19	27	1.89
1437073--1437184	36	3.0	37	92	3	190	39	14	19	26	1.90
1437209--1437278	36	1.9	36	91	5	115	40	14	21	24	1.90
1438236--1438290	22	2.5	22	96	0	101	25	12	25	36	1.91
1438925--1439005	15	5.3	15	77	19	78	1	13	7	77	1.03
1438924--1438966	20	2.2	20	87	8	61	2	11	4	81	0.93
1438935--1439005	31	2.3	31	84	13	94	0	14	8	77	0.98
1442006--1442086	5	16.6	5	76	12	62	77	3	0	18	0.91
1442002--1442086	4	20.2	4	73	21	52	77	3	0	18	0.91
1442002--1442095	25	3.5	25	73	18	75	76	4	1	18	1.00
1442002--1442133	55	2.4	56	80	8	137	73	3	3	20	1.10
1442000--1442173	19	8.8	18	66	23	68	70	3	3	22	1.18
1442788--1442919	37	3.7	35	82	5	140	31	13	12	42	1.82
1442822--1442919	34	2.8	36	86	9	139	29	13	13	43	1.81
1442788--1442925	71	1.9	73	86	4	199	31	13	13	41	1.83
1446409--1446456	24	2.0	24	91	0	78	60	10	10	18	1.57
1448064--1448104	21	2.0	21	85	0	55	58	0	2	39	1.11
1449774--1449814	17	2.5	17	84	11	50	17	12	0	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1450468--1450497	15	1.9	16	93	6	53	33	0	16	50	1.46
1464179--1464219	20	2.0	20	85	0	55	48	2	7	41	1.44
1469029--1469114	31	2.7	31	85	5	84	48	0	6	44	1.29
1474417--1474459	17	2.4	18	88	11	63	37	6	2	53	1.41
1474989--1475038	26	1.9	26	87	0	73	30	4	22	44	1.71
1481111--1481178	6	11.3	6	100	0	136	33	0	50	16	1.45
1486785--1486852	29	2.3	29	76	19	68	47	1	13	38	1.52
1487140--1487213	10	7.6	10	72	22	68	58	20	10	10	1.62
1487144--1487208	16	4.1	16	91	0	112	56	21	12	9	1.63
1487558--1487598	14	2.9	14	81	0	55	60	21	7	9	1.52

Tables:   1   2   3   4   5   6   7   8   9