genome.fa.s8062.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008062.1 Hibiscus syriacus cultivar Beakdansim tig00110557_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2089609

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 995 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2049394--2049434	15	2.7	15	80	0	55	53	0	4	41	1.22
2051055--2051112	28	2.1	27	84	9	73	41	8	8	41	1.66
2061054--2061191	21	6.7	21	69	6	68	35	25	17	21	1.95
2061159--2061547	20	19.5	20	85	5	482	34	26	18	20	1.95
2062230--2062276	24	2.0	24	87	8	69	25	14	21	38	1.92
2062451--2062475	12	2.1	12	100	0	50	72	0	28	0	0.86
2064756--2065029	19	15.4	19	81	15	354	47	18	20	14	1.83
2064756--2065051	71	4.2	74	82	13	314	46	18	20	14	1.83
2064784--2065051	109	2.5	104	90	6	446	46	17	21	14	1.83
2064756--2065067	161	2.0	157	91	5	502	46	18	20	15	1.84
2064784--2065051	52	5.0	52	90	4	437	46	17	21	14	1.83
2065058--2065159	19	5.6	19	82	12	142	13	24	17	44	1.85
2065266--2065302	14	2.6	14	91	0	65	45	21	0	32	1.52
2067256--2067312	14	3.7	14	77	20	60	45	22	21	10	1.82
2067237--2067329	33	2.8	33	95	0	168	47	21	20	10	1.80
2067200--2067334	19	7.6	19	76	16	128	45	23	19	11	1.82
2067330--2067458	19	7.3	19	75	17	125	8	17	28	45	1.77
2067330--2067421	33	2.8	33	93	3	150	7	18	28	45	1.76
2067502--2067973	93	5.1	93	98	1	912	46	18	12	22	1.83
2067502--2067973	185	2.6	185	99	0	926	46	18	12	22	1.83
2069677--2069766	14	5.7	14	74	23	81	42	23	25	8	1.83
2069669--2069783	33	3.5	33	95	0	212	45	20	24	9	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2069676--2069788	19	6.8	18	72	23	88	43	22	24	9	1.83
2069800--2069854	14	3.6	14	73	21	56	9	25	23	41	1.83
2069784--2069854	33	2.2	33	94	0	124	8	22	25	43	1.81
2069795--2069876	33	2.5	33	89	2	119	9	25	21	42	1.84
2069807--2069895	20	4.8	20	72	19	75	12	24	19	43	1.85
2069975--2070045	33	2.2	33	92	0	115	47	18	22	11	1.80
2070227--2070281	22	2.5	22	81	0	74	20	16	40	23	1.91
2070427--2070619	20	9.6	20	82	5	219	19	19	25	35	1.95
2070427--2070619	60	3.2	60	83	0	251	19	19	25	35	1.95
2070675--2070726	20	2.6	20	96	0	95	21	13	26	38	1.90
2071087--2071116	11	2.7	11	89	0	51	36	13	3	46	1.60
2071324--2071373	25	2.0	25	100	0	100	60	20	12	8	1.57
2082038--2082076	20	2.0	20	85	10	53	58	5	5	30	1.41

Tables:   1   2   3   4   5   6   7   8   9

The End!