genome.fa.s8062.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008062.1 Hibiscus syriacus cultivar Beakdansim tig00110557_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2089609

Tables:   1   2   3   4   5   6   7   8   9   

This is table  5  of  9  ( 995 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
959005--959054	2	25.0	2	100	0	100	50	0	0	50	1.00
960258--960326	35	2.0	35	94	5	122	46	10	17	26	1.79
960398--960469	30	2.4	31	79	6	76	38	6	0	54	1.28
961619--961652	2	17.0	2	93	0	59	47	0	0	52	1.00
961825--961864	17	2.3	19	87	12	59	60	2	2	35	1.24
964178--964225	20	2.4	20	92	0	78	8	37	14	39	1.76
969422--969710	114	2.6	110	80	9	320	13	26	19	40	1.88
979139--979250	57	2.0	57	98	0	215	30	25	9	33	1.88
983518--983574	3	18.7	3	81	3	69	31	1	1	64	1.13
983608--983645	11	3.6	10	86	13	58	42	39	15	2	1.61
983649--983723	25	3.0	25	94	0	123	37	20	14	28	1.92
987716--987775	31	2.0	31	83	9	79	15	16	11	56	1.67
990831--990877	18	2.6	17	75	21	51	68	14	12	4	1.36
990861--990898	11	3.4	11	89	7	58	71	10	13	5	1.30
990870--990904	18	1.9	18	88	11	54	71	11	14	2	1.25
990861--990903	12	3.7	11	87	9	50	69	11	13	4	1.33
992108--992161	28	1.9	28	96	0	99	48	24	0	27	1.52
992532--992630	36	2.8	36	95	0	171	35	16	12	36	1.85
992753--992981	101	2.3	100	81	6	248	30	19	12	37	1.89
992954--993051	36	2.8	34	78	9	101	34	19	13	32	1.90
993293--993396	28	3.6	28	82	10	129	28	11	13	46	1.78
993309--993394	29	3.0	29	86	10	122	29	11	12	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
993350--993488	62	2.2	63	81	10	151	32	15	10	41	1.81
993605--993648	15	2.9	15	93	0	70	31	20	4	43	1.72
993999--994352	40	8.4	40	71	15	223	25	31	18	25	1.98
994029--994352	46	7.6	45	72	15	195	25	31	18	25	1.98
993989--994331	86	4.0	83	74	14	227	24	31	18	24	1.98
993999--994331	128	2.6	129	93	1	580	25	31	18	24	1.98
994514--994570	3	18.7	3	81	3	69	31	1	1	64	1.13
994604--994641	11	3.6	10	86	13	58	42	39	18	0	1.50
994645--994719	25	3.0	25	94	0	123	37	20	14	28	1.92
998693--998752	31	2.0	31	83	9	79	15	16	11	56	1.67
1001839--1001876	11	3.4	11	89	7	58	71	10	13	5	1.30
1003061--1003138	28	2.6	29	86	8	95	47	23	0	29	1.52
1003059--1003126	32	2.1	32	94	0	118	47	22	0	30	1.52
1003510--1003608	36	2.8	36	95	0	171	35	16	12	36	1.85
1003731--1003959	101	2.3	100	81	6	248	30	19	12	37	1.89
1003932--1004029	36	2.8	34	78	9	101	34	19	13	32	1.90
1004273--1004375	29	3.6	28	82	10	127	29	11	13	45	1.79
1004330--1004469	62	2.2	63	81	8	151	32	15	10	41	1.81
1004586--1004629	15	2.9	15	93	0	70	31	20	4	43	1.72
1004980--1005333	40	8.4	40	71	15	223	25	31	18	25	1.98
1005010--1005333	46	7.6	45	72	15	195	25	31	18	25	1.98
1004970--1005312	86	4.0	83	74	14	227	24	31	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1004980--1005312	128	2.6	129	93	1	580	25	31	18	24	1.98
1005494--1005547	3	17.7	3	80	3	63	31	1	1	64	1.14
1005512--1005554	19	2.3	18	80	11	50	32	2	0	65	1.06
1005581--1005618	11	3.6	10	86	13	58	42	39	18	0	1.50
1005622--1005696	25	3.0	25	94	0	123	37	20	14	28	1.92
1009876--1009901	4	6.5	4	100	0	52	76	0	0	23	0.78
1013775--1013815	16	2.6	16	92	3	66	82	7	4	4	0.93
1017301--1017332	14	2.3	15	89	10	50	6	15	65	12	1.44
1017515--1017604	2	45.5	2	97	2	173	51	0	0	48	1.00
1030203--1030230	2	14.0	2	100	0	56	50	0	0	50	1.00
1032238--1032326	40	2.2	40	97	0	169	22	22	32	22	1.98
1034195--1034268	31	2.4	31	76	2	85	51	10	10	27	1.70
1045764--1045801	14	2.7	14	91	0	58	63	5	5	26	1.37
1046316--1046355	18	2.2	18	86	0	53	47	7	12	32	1.69
1051982--1052079	30	3.4	28	83	6	115	38	9	12	39	1.75
1051998--1052079	29	2.8	28	82	12	87	39	9	10	40	1.74
1052373--1052461	34	2.5	34	83	5	106	24	33	29	12	1.92
1059990--1060019	2	15.5	2	93	6	53	46	0	0	53	1.00
1063903--1063974	29	2.4	30	81	2	92	30	0	5	63	1.17
1066022--1066098	24	3.4	23	68	25	65	22	3	5	68	1.26
1066021--1066121	44	2.3	44	93	1	168	21	3	5	68	1.28
1066108--1066142	10	3.7	9	88	11	52	11	2	0	85	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1069506--1069624	37	2.9	43	70	21	119	58	1	3	36	1.24
1070062--1070100	3	13.0	3	100	0	78	66	0	0	33	0.92
1074970--1075010	21	2.0	21	95	0	73	17	24	17	41	1.89
1074971--1075017	21	2.2	21	88	0	67	21	23	19	36	1.95
1078478--1078635	19	8.7	19	74	15	129	43	18	22	14	1.87
1078478--1078633	33	4.3	39	78	11	122	42	19	23	14	1.88
1078538--1078631	33	2.8	33	95	0	161	44	19	23	12	1.85
1078641--1078706	19	3.7	19	73	19	70	12	21	19	46	1.82
1078813--1078849	14	2.6	14	91	0	65	45	21	0	32	1.52
1081425--1081453	15	2.0	15	93	6	51	55	13	13	17	1.70
1081698--1081745	15	3.2	15	100	0	96	14	25	33	27	1.94
1081730--1081782	18	2.7	19	77	14	54	22	24	28	24	2.00
1082826--1082998	94	1.8	93	93	1	301	47	17	12	23	1.81
1084677--1084804	19	6.6	19	88	3	166	46	20	18	14	1.83
1084850--1084896	20	2.3	20	81	0	58	14	10	12	61	1.56
1085448--1085661	20	10.6	20	74	8	182	18	18	24	38	1.93
1085450--1085702	81	3.1	80	83	5	271	18	18	24	38	1.93
1085450--1085702	41	6.2	41	83	4	284	18	18	24	38	1.93
1085696--1085748	21	2.5	21	73	11	54	24	18	24	32	1.97
1089230--1089413	44	4.2	44	74	12	137	22	19	7	51	1.71
1089248--1089412	43	3.8	43	75	13	131	21	19	7	50	1.72
1089290--1089497	43	4.8	43	70	14	160	24	17	7	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1090291--1090332	17	2.5	17	96	3	77	45	0	4	50	1.23
1093789--1093824	18	2.0	18	100	0	72	22	22	11	44	1.84
1094175--1094376	96	2.1	96	84	3	264	19	24	13	42	1.88
1103371--1103429	21	2.8	21	84	0	64	25	35	10	28	1.89
1103397--1103440	21	2.1	21	82	0	52	31	34	6	27	1.83
1104106--1104147	22	1.9	22	85	0	57	35	0	4	59	1.19
1105046--1105080	10	3.5	10	85	14	54	34	25	0	40	1.56
1112432--1112557	60	2.1	60	95	0	225	29	21	17	31	1.96
1118149--1118175	12	2.2	12	100	0	54	0	59	0	40	0.98
1124569--1124616	21	2.3	21	100	0	96	35	14	0	50	1.44
1125933--1125975	22	1.9	23	85	4	61	53	4	0	41	1.21
1144710--1144740	16	1.9	16	93	0	53	54	16	9	19	1.68
1151861--1151901	12	3.4	12	82	0	55	53	0	46	0	1.00
1153689--1153718	15	2.0	15	100	0	60	26	13	13	46	1.80
1158935--1158982	21	2.3	21	92	0	78	29	12	18	39	1.88
1164869--1164898	16	1.9	16	93	6	53	43	0	0	56	0.99
1164887--1164928	20	2.2	20	82	4	50	47	2	4	45	1.36
1166498--1166525	14	2.0	14	100	0	56	21	42	14	21	1.88
1168645--1169199	277	2.0	277	100	0	1110	32	21	16	28	1.95
1173562--1173594	3	11.0	3	87	12	50	66	0	33	0	0.92
1173556--1173595	12	3.5	11	86	10	53	67	0	30	2	1.04
1176825--1177306	198	2.4	198	92	0	768	24	23	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1178186--1178233	21	2.3	21	96	0	87	41	18	18	20	1.90
1184704--1184751	23	2.1	23	100	0	96	39	14	33	12	1.84
1185701--1185789	29	3.1	29	85	0	124	17	40	28	13	1.88
1185996--1186079	29	2.9	29	83	0	96	13	29	39	17	1.88
1186786--1186843	19	3.2	18	75	20	66	55	29	12	3	1.53
1186786--1186842	18	3.2	17	73	26	55	54	29	12	3	1.54
1191731--1191769	19	2.1	19	85	0	51	41	5	2	51	1.38
1199013--1199069	21	2.7	21	91	0	87	26	28	21	24	1.99
1205360--1205404	13	3.5	13	87	6	65	48	0	0	51	1.00
1205363--1205399	12	3.0	12	92	7	65	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9