genome.fa.s8128.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008128.1 Hibiscus syriacus cultivar Beakdansim tig00110683_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4987688

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  20  of  20  ( 2387 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4783420--4783498	34	2.3	34	82	0	86	24	10	24	41	1.85
4783550--4783589	21	1.9	21	85	10	55	42	2	30	25	1.68
4790756--4790827	35	2.1	35	100	0	144	40	11	20	27	1.87
4791203--4791238	13	2.6	14	91	8	56	25	5	2	66	1.27
4791482--4791516	2	17.5	2	100	0	70	48	0	0	51	1.00
4791629--4791701	39	1.9	37	86	5	101	19	28	5	46	1.72
4799769--4799795	14	1.9	14	100	0	54	37	22	18	22	1.95
4799814--4800545	106	7.0	106	85	4	981	36	22	17	23	1.95
4799814--4801297	411	3.6	411	89	3	2072	34	22	18	24	1.96
4800546--4801298	106	7.2	106	85	3	997	33	22	19	24	1.97
4799832--4801267	722	2.0	717	88	2	2164	35	22	18	23	1.96
4801633--4801704	35	2.1	35	97	0	135	41	11	19	27	1.85
4802157--4802187	2	15.5	2	100	0	62	48	0	0	51	1.00
4802493--4802569	41	1.9	39	86	5	109	16	28	6	48	1.71
4802653--4802708	2	28.5	2	96	3	105	48	0	0	51	1.00
4802760--4802807	14	3.4	14	85	5	53	16	10	0	72	1.10
4821638--4821709	20	3.5	20	79	5	65	25	26	15	33	1.95
4827510--4827549	16	2.5	16	100	0	80	27	30	5	37	1.78
4832235--4832301	29	2.3	29	84	5	82	23	19	25	31	1.98
4834633--4834849	97	2.2	98	80	10	250	41	19	10	28	1.84
4842606--4842660	29	1.9	28	85	10	76	38	0	0	61	0.96
4844921--4844985	27	2.4	26	82	12	69	26	3	7	63	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4847388--4847510	61	2.0	61	93	0	210	25	24	24	26	2.00
4850537--4850825	54	5.4	54	88	1	418	28	17	20	33	1.95
4857031--4857068	15	2.5	15	95	0	67	18	28	5	47	1.70
4858166--4858335	90	1.9	88	95	2	304	44	6	11	38	1.66
4859323--4859391	34	2.0	34	100	0	138	14	20	20	44	1.86
4871906--4872294	182	2.1	181	86	3	548	42	13	14	28	1.84
4874149--4874205	24	2.5	23	77	8	62	42	0	8	49	1.34
4876438--4876486	19	2.6	19	93	0	80	32	4	10	53	1.54
4876936--4878470	199	7.7	196	82	4	1596	37	14	16	31	1.88
4876936--4878469	398	3.8	398	85	3	1906	37	14	16	31	1.88
4882544--4883218	202	3.4	197	83	6	805	37	15	16	30	1.89
4883279--4883398	64	1.9	64	94	0	213	31	11	12	44	1.78
4884208--4884244	19	1.9	19	88	0	56	29	0	2	67	1.04
4886943--4886978	3	12.0	3	87	0	54	36	0	61	2	1.11
4918570--4918786	116	1.9	117	80	2	258	45	10	11	33	1.73
4919297--4919470	7	24.9	7	98	0	285	10	46	14	28	1.77
4919709--4919733	12	2.1	12	100	0	50	8	16	16	60	1.58
4921124--4921189	3	22.0	3	87	6	89	39	0	0	60	0.97
4922372--4922470	3	34.0	3	71	17	75	31	2	1	65	1.10
4922372--4922470	13	7.5	13	72	22	57	31	2	1	65	1.10
4922333--4922410	21	3.5	21	71	23	70	32	2	1	64	1.15
4922471--4922507	18	2.1	18	90	10	58	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4922571--4922800	120	1.9	120	82	4	286	38	8	7	45	1.62
4924895--4924948	14	3.8	14	82	4	63	24	14	9	51	1.71
4928471--4928542	4	17.8	4	76	18	69	75	4	19	1	1.05
4928501--4928550	8	6.1	8	82	13	57	80	0	20	0	0.72
4931984--4932098	34	3.1	34	63	21	79	38	13	16	31	1.88
4931996--4932114	38	3.1	38	62	21	86	36	17	16	28	1.92
4931936--4932119	76	2.4	76	95	0	323	37	16	15	30	1.90
4933513--4933567	22	2.5	22	87	0	83	34	14	14	36	1.87
4933969--4934176	113	1.8	113	91	2	346	41	14	18	25	1.88
4934153--4934190	17	2.2	17	100	0	76	50	5	23	21	1.69
4934040--4934306	130	2.1	130	85	2	358	40	12	19	26	1.88
4934249--4934347	42	2.4	42	89	3	157	50	9	22	18	1.74
4934170--4934461	155	1.9	155	91	0	485	40	12	20	26	1.87
4934289--4934687	113	3.5	112	85	4	550	39	13	19	26	1.90
4934630--4934728	42	2.4	42	89	3	157	51	9	20	19	1.73
4934404--4934955	268	2.1	266	85	4	736	40	13	19	26	1.89
4934170--4935602	381	3.8	381	96	0	2564	39	13	19	27	1.89
4934516--4934842	155	2.1	153	91	1	528	40	12	21	25	1.88
4934670--4935068	113	3.5	113	85	2	541	39	13	20	27	1.89
4935011--4935109	42	2.4	42	89	3	157	50	9	22	18	1.74
4934897--4935223	155	2.1	153	91	1	537	41	11	21	26	1.86
4935050--4935449	113	3.5	113	86	2	577	40	13	19	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4935392--4935486	40	2.4	40	92	0	163	47	9	23	20	1.79
4935278--4935757	153	3.1	153	93	0	789	40	11	21	27	1.88
4935545--4935640	40	2.3	42	89	3	151	50	9	21	18	1.75
4934897--4936187	534	2.4	533	94	1	2254	39	12	20	27	1.88
4935585--4935982	113	3.5	113	82	2	494	39	12	19	28	1.88
4935926--4936023	42	2.4	40	88	5	153	53	6	21	19	1.67
4935812--4936187	154	2.5	155	89	3	554	41	11	20	26	1.87
4935431--4936137	380	1.9	381	94	0	1245	39	12	20	27	1.88
4936114--4936172	17	3.4	17	70	25	59	49	10	23	16	1.77
4936080--4936172	36	2.4	38	89	7	136	48	10	22	18	1.79
4936415--4936492	3	26.0	3	87	5	113	38	0	0	61	0.96
4937636--4937715	12	6.4	12	68	17	56	27	2	2	67	1.16
4937633--4937681	24	2.0	25	84	11	66	26	0	2	71	0.97
4937606--4937693	39	2.2	40	82	9	101	30	2	1	65	1.12
4937645--4937718	26	2.8	26	80	13	71	29	2	1	66	1.14
4937744--4937778	16	2.2	16	90	10	54	60	0	0	40	0.97
4937938--4937979	20	2.2	19	86	4	57	33	0	2	64	1.07
4937842--4938069	120	1.9	118	81	6	273	38	7	8	46	1.61
4938035--4938088	25	2.2	25	83	6	65	50	1	0	48	1.11
4942211--4942345	47	2.8	49	86	5	177	28	16	23	31	1.96
4942216--4942357	49	2.9	49	83	4	128	29	15	25	29	1.96
4951244--4951340	28	3.5	27	87	8	124	58	2	2	37	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4951259--4951383	65	1.9	66	85	8	175	58	4	1	35	1.29
4951244--4951352	3	36.0	3	76	12	98	58	1	2	36	1.23
4951813--4951945	49	2.7	48	77	10	126	30	16	24	28	1.97
4951949--4952036	46	1.9	46	92	0	149	44	12	20	22	1.85
4953887--4953933	2	23.5	2	100	0	94	51	0	0	48	1.00
4961573--4961616	19	2.4	19	85	11	56	52	2	0	45	1.13
4962921--4962976	23	2.4	23	80	16	71	60	1	3	33	1.24
4962907--4962976	3	23.0	3	79	13	72	61	1	2	34	1.20
4963484--4963548	20	3.2	20	72	12	60	40	21	18	20	1.92
4964133--4964190	22	2.6	22	86	2	80	36	13	12	37	1.82
4964273--4964382	56	2.0	56	96	0	202	29	23	9	38	1.85
4970774--4970874	3	33.0	3	75	16	84	60	1	2	34	1.23
4970764--4970874	43	2.5	45	80	14	122	58	1	2	36	1.23
4971287--4971409	47	2.6	49	82	3	160	27	17	24	30	1.97
4972122--4972180	27	2.1	28	90	6	102	28	0	16	54	1.43
4972557--4972613	30	1.9	30	88	0	87	36	5	10	47	1.61
4974988--4975066	21	3.8	21	71	15	65	39	22	16	21	1.92
4974978--4975069	42	2.2	41	83	11	107	35	25	14	25	1.93
4979592--4979643	11	4.6	11	79	11	52	15	15	0	69	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20

The End!