genome.fa.s8129.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008129.1 Hibiscus syriacus cultivar Beakdansim tig00110684_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2577775

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  2  of  10  ( 1095 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238343--238543	96	2.1	95	80	8	212	26	20	17	34	1.95
243869--244013	45	3.5	42	70	19	117	30	24	11	33	1.91
243859--244181	79	4.1	79	89	0	466	28	22	11	37	1.89
243983--244047	34	1.9	34	87	0	94	30	23	7	38	1.83
244581--244622	20	2.1	20	86	0	57	30	28	11	28	1.92
253130--253315	36	5.2	36	68	14	134	38	8	5	47	1.56
253237--253399	36	4.7	34	69	18	122	40	6	4	47	1.51
253129--253399	71	3.9	70	79	10	272	40	7	5	46	1.55
254446--254560	42	2.7	42	82	12	146	49	0	0	48	1.13
254523--254567	21	2.1	22	88	12	67	55	0	2	42	1.12
261980--262013	17	2.0	17	88	0	50	29	8	26	35	1.87
264588--264642	29	1.9	28	88	3	83	47	5	16	30	1.69
267211--267255	14	3.2	14	80	0	54	75	0	4	20	0.97
267211--267248	20	1.9	20	89	10	60	76	0	5	18	0.97
267282--267314	8	4.2	8	92	3	50	69	0	3	27	1.03
276680--276725	24	1.9	24	86	8	67	41	17	32	8	1.80
279236--279507	110	2.5	110	82	7	306	29	17	17	35	1.93
279246--279516	55	4.9	55	79	9	252	29	18	17	35	1.93
285957--286123	55	3.1	55	84	4	196	26	20	19	34	1.96
303180--303208	15	1.9	15	100	0	58	34	20	10	34	1.87
304549--304594	15	3.1	15	87	0	65	10	15	65	8	1.47
306232--306261	15	2.0	15	100	0	60	26	33	6	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312038--312087	20	2.5	20	100	0	100	38	24	28	10	1.87
314138--314357	45	4.9	45	87	2	316	30	20	9	40	1.84
314141--314395	90	2.8	90	84	5	300	29	21	10	38	1.87
314138--314394	135	1.9	134	87	4	374	29	21	10	38	1.87
314804--315046	95	2.6	93	81	5	249	29	26	15	28	1.96
319722--319772	19	2.5	20	87	9	68	45	5	11	37	1.65
319940--319993	22	2.5	22	87	0	81	33	20	24	22	1.97
322863--322897	13	2.6	14	86	9	54	48	17	0	34	1.47
337413--337672	2	130.5	2	93	0	441	46	0	53	0	1.00
338781--338812	7	4.6	7	100	0	64	0	37	0	62	0.95
344239--344324	38	2.3	38	89	0	127	33	13	17	34	1.89
345235--345291	20	2.9	19	86	5	78	35	24	15	24	1.95
347342--347399	17	3.4	17	83	4	64	63	5	5	25	1.36
355903--355954	26	2.0	26	96	0	95	23	23	21	32	1.98
356030--356094	20	3.2	20	86	0	94	13	38	16	30	1.88
356627--356669	13	3.2	13	80	6	59	23	25	13	37	1.92
357921--357967	18	2.6	18	86	0	67	27	14	29	27	1.96
357957--358011	20	2.7	20	82	5	65	36	12	25	25	1.91
357955--358008	22	2.6	21	79	5	65	35	12	29	22	1.91
358318--358609	54	5.4	54	84	0	359	27	18	17	35	1.94
358318--358609	162	1.8	162	83	0	395	27	18	17	35	1.94
360761--360809	20	2.5	20	96	0	89	18	38	16	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362210--362340	7	18.7	7	93	3	228	28	16	0	55	1.41
370673--370785	39	2.9	39	85	0	154	29	17	26	26	1.98
374806--374946	46	3.1	46	89	0	219	25	19	7	47	1.76
375491--375539	25	2.0	24	85	14	66	26	0	28	44	1.54
376669--376845	95	1.9	94	83	5	232	33	16	25	24	1.96
377327--377568	26	10.2	26	66	24	110	42	12	21	23	1.87
377231--377542	46	6.7	46	84	2	376	43	11	21	23	1.85
377497--377568	27	2.7	26	91	4	117	41	13	23	20	1.88
383591--383644	22	2.6	20	83	11	72	25	14	33	25	1.95
383516--383699	95	1.9	94	89	5	282	33	14	27	25	1.95
384026--384196	46	3.7	46	84	2	209	41	12	21	25	1.87
384055--384131	26	3.2	26	64	27	69	42	12	16	27	1.85
385336--385574	54	4.4	54	88	0	343	28	18	19	33	1.96
391002--391028	13	2.1	13	100	0	54	22	7	14	55	1.64
392137--392184	22	2.2	23	85	7	64	37	22	2	37	1.66
393465--393507	18	2.3	19	84	4	52	32	0	4	62	1.15
395818--396005	95	2.0	95	90	0	295	34	16	21	27	1.95
395819--396039	95	2.3	95	85	1	291	33	16	23	26	1.95
396362--396816	54	8.4	54	87	0	613	27	17	20	34	1.95
397466--398201	54	13.8	54	84	4	891	32	17	15	34	1.91
397816--397901	27	3.2	27	63	18	70	31	18	16	33	1.93
398033--398118	27	3.2	27	66	18	70	31	15	17	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403246--403722	54	8.8	54	87	0	661	32	18	15	33	1.92
403471--403556	27	3.2	27	66	18	70	31	18	16	33	1.93
408048--408082	2	17.5	2	93	0	61	48	2	0	48	1.16
411557--411736	92	2.0	92	95	0	324	35	20	15	29	1.93
413701--413745	22	2.1	21	84	12	56	44	33	2	20	1.63
417327--417393	34	2.0	34	94	5	120	44	5	8	40	1.60
423861--423919	30	2.0	30	86	6	84	67	5	5	22	1.30
434710--434736	12	2.2	12	100	0	54	33	0	29	37	1.58
446832--446858	2	13.5	2	100	0	54	51	0	0	48	1.00
455866--455905	16	2.5	16	100	0	80	20	30	0	50	1.49
465465--465498	16	2.1	17	88	5	52	58	2	0	38	1.13
466232--466300	35	2.0	35	85	0	93	37	13	5	43	1.67
467265--467289	2	12.5	2	100	0	50	48	0	0	52	1.00
468111--468205	46	2.1	46	88	4	138	35	11	21	31	1.89
470374--470403	12	2.5	12	100	0	60	26	33	6	33	1.83
473542--473596	25	2.2	25	96	0	101	25	20	21	32	1.97
473999--474066	17	3.9	17	80	1	73	41	5	14	38	1.70
474059--474121	17	3.7	17	72	16	67	46	7	19	26	1.77
474068--474175	34	3.2	33	87	7	121	43	12	13	29	1.82
474068--474150	34	2.4	34	97	0	157	45	10	14	28	1.78
474076--474131	17	3.3	17	67	18	53	44	10	14	30	1.79
478411--478471	2	30.5	2	100	0	122	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480036--480097	31	2.0	31	87	0	88	43	12	9	33	1.76
482272--482298	4	6.8	4	100	0	54	51	22	0	25	1.48
482296--482329	2	17.0	2	100	0	68	50	0	0	50	1.00
482620--482656	14	2.6	14	91	8	58	64	0	16	18	1.29
486263--486343	38	2.1	38	97	0	153	24	12	25	37	1.91
490007--490449	240	1.8	241	91	1	728	37	12	18	30	1.89
490686--490722	11	3.5	11	82	14	51	43	13	0	43	1.44
494227--494280	3	17.7	3	92	3	90	62	1	1	33	1.16
496233--497082	157	5.4	157	83	4	967	28	19	5	47	1.71
496254--497082	315	2.6	316	84	3	990	28	18	5	47	1.71
497849--498039	60	3.2	60	77	7	197	30	12	17	39	1.86
499329--499378	24	2.1	24	96	0	91	34	4	10	52	1.54
501247--501323	40	1.9	39	84	7	102	59	3	16	19	1.52
509438--509471	2	17.0	2	100	0	68	50	0	0	50	1.00
514139--514199	24	2.6	24	97	2	115	44	16	8	31	1.77
526802--526852	21	2.4	21	100	0	102	29	13	31	25	1.94
529015--529051	16	2.2	17	90	4	58	27	0	0	72	0.84
531492--531550	3	19.3	3	85	3	82	40	0	0	59	0.97
532843--532904	2	31.0	2	100	0	124	50	0	0	50	1.00
536618--537066	229	2.0	227	94	1	783	44	7	7	39	1.61
537132--537177	20	2.3	19	89	10	74	54	10	17	17	1.70
537298--537345	20	2.4	20	83	13	71	52	10	16	20	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
539571--539635	21	3.1	21	80	10	71	41	15	29	13	1.86
539668--539728	32	1.9	32	89	0	95	29	0	47	22	1.52
541525--541573	19	2.6	19	93	0	80	30	2	10	57	1.43
541692--543254	198	7.9	198	98	0	3026	36	16	15	30	1.91
541692--543254	593	2.6	595	98	1	3037	36	16	15	30	1.91
544685--544756	3	24.0	3	74	5	65	36	5	33	25	1.79
545955--546380	183	2.3	182	95	2	746	35	13	17	33	1.89
546590--546652	23	2.7	23	90	0	90	36	7	17	38	1.79
546590--546662	23	3.2	23	86	3	85	34	6	19	39	1.78
546927--546976	25	2.0	25	88	3	75	34	8	20	38	1.82

Tables:   1   2   3   4   5   6   7   8   9   10