genome.fa.s8136.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008136.1 Hibiscus syriacus cultivar Beakdansim tig00110691_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1585607

Tables:   1   2   3   4   5   6   7   8   9   

This is table  6  of  9  ( 1001 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
948377--948410	2	17.5	2	93	6	61	52	0	0	47	1.00
948343--948538	37	5.0	40	76	14	153	42	2	8	46	1.45
948395--948743	39	9.6	38	79	16	229	43	2	8	45	1.49
948395--948743	77	4.8	76	75	19	243	43	2	8	45	1.49
948496--948565	28	2.7	27	85	10	101	50	2	7	40	1.45
948533--948756	34	6.0	36	85	9	215	43	3	8	45	1.50
948541--948756	107	2.0	110	85	7	296	42	2	8	45	1.49
948740--948773	16	2.1	16	89	10	52	35	2	2	58	1.28
953735--953767	2	16.5	2	100	0	66	48	0	0	51	1.00
963760--963788	13	2.2	13	100	0	58	51	10	20	17	1.74
964404--964448	23	2.0	23	95	4	83	40	0	11	48	1.39
966815--966839	2	12.5	2	100	0	50	48	0	0	52	1.00
966969--966995	14	1.9	14	100	0	54	0	11	0	88	0.50
966909--967074	49	3.3	48	77	11	131	12	11	1	74	1.16
972307--972492	83	2.2	83	84	1	239	36	20	17	25	1.94
972449--972567	60	2.0	60	86	0	166	35	24	15	25	1.94
972509--973235	84	8.7	84	84	3	919	35	23	17	23	1.95
973729--973753	2	12.5	2	100	0	50	48	0	0	52	1.00
975154--975211	18	3.4	17	79	11	64	15	8	0	75	1.02
975176--975288	4	26.5	4	73	20	70	20	6	1	71	1.16
975176--975392	9	23.2	9	71	15	88	16	9	1	72	1.19
975145--975329	91	2.0	91	79	13	195	18	8	1	71	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
975237--975288	19	2.8	18	88	5	68	25	3	1	69	1.16
975165--975294	14	8.9	14	69	23	72	19	6	1	73	1.13
975346--975400	27	2.1	26	89	3	83	12	12	1	72	1.20
975468--975495	6	4.7	6	100	0	56	46	0	0	53	1.00
977785--977847	26	2.4	26	94	0	108	30	9	17	42	1.81
977824--977857	16	2.1	16	94	0	59	38	5	20	35	1.77
979680--979714	18	1.9	18	94	0	61	22	34	22	20	1.97
986681--986730	17	2.7	20	78	15	61	34	4	0	62	1.14
986769--986886	47	2.5	47	85	8	143	22	0	22	54	1.45
986769--986886	24	5.0	24	83	9	145	22	0	22	54	1.45
986903--986975	26	2.8	26	84	10	80	10	5	4	79	1.03
986903--986979	40	1.9	40	84	5	102	12	5	3	77	1.07
987046--987084	2	19.5	2	100	0	78	48	0	0	51	1.00
998122--999511	106	13.2	106	91	1	2118	34	25	17	22	1.96
1000915--1000990	37	2.0	38	82	7	93	30	5	1	63	1.25
1000941--1000990	17	2.7	20	78	15	61	34	4	0	62	1.14
1001028--1001170	47	3.0	46	84	6	178	21	0	23	54	1.49
1001028--1001170	23	6.0	24	79	11	152	21	0	23	54	1.49
1001196--1001255	8	7.4	8	72	9	50	8	8	3	80	1.02
1001205--1001247	15	2.7	15	86	10	52	11	6	2	79	1.02
1001176--1001256	40	2.1	38	90	4	126	13	6	4	75	1.16
1001326--1001378	2	26.5	2	100	0	106	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1001718--1001765	18	2.5	20	80	16	64	25	31	20	22	1.98
1001973--1002044	22	3.3	21	72	14	65	27	19	5	47	1.72
1010949--1010994	20	2.3	20	100	0	92	30	32	8	28	1.87
1018785--1018859	35	2.1	35	85	4	98	37	26	24	12	1.90
1018959--1019071	24	4.8	24	80	12	85	43	18	14	23	1.87
1018967--1019079	48	2.4	48	79	5	113	42	18	13	25	1.87
1021492--1021543	18	2.9	18	82	0	68	15	21	46	17	1.84
1023611--1023726	24	4.8	24	78	10	112	39	20	15	24	1.91
1026186--1026230	23	2.0	23	86	0	63	11	22	48	17	1.78
1026202--1026227	13	2.0	13	100	0	52	7	23	53	15	1.67
1026197--1026231	18	1.9	18	94	0	61	8	22	51	17	1.72
1027323--1027392	32	2.2	32	92	0	113	35	0	34	30	1.58
1031312--1031359	12	4.0	11	81	13	51	20	4	2	72	1.11
1031840--1031864	13	1.9	13	100	0	50	72	4	24	0	1.02
1038090--1038210	38	3.2	37	80	6	118	28	22	9	39	1.84
1038564--1038808	131	1.9	132	85	0	339	31	20	17	30	1.95
1038874--1039933	131	8.1	130	79	5	803	33	20	15	30	1.94
1038878--1039857	261	3.8	260	78	5	921	34	20	15	30	1.93
1038879--1039985	261	4.2	261	77	7	912	33	20	15	29	1.94
1040233--1040284	3	18.0	3	96	4	90	30	0	0	69	0.89
1045046--1045145	21	4.8	21	68	15	73	37	21	20	22	1.95
1045152--1045324	20	8.6	20	81	4	204	36	25	19	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1045111--1045322	81	2.6	79	87	5	275	37	25	18	19	1.94
1045111--1045322	40	5.2	41	86	5	274	37	25	18	19	1.94
1045881--1045993	20	5.9	19	76	17	103	51	18	17	12	1.76
1045884--1045960	41	1.9	40	87	12	113	50	18	16	14	1.78
1045941--1046019	14	5.3	14	81	14	95	48	20	21	10	1.79
1045936--1046000	33	2.0	33	100	0	130	49	20	21	9	1.76
1045941--1046030	47	1.9	47	90	0	144	47	22	20	10	1.79
1046026--1046185	19	9.1	19	68	21	107	12	23	19	44	1.85
1046048--1046136	14	5.6	14	69	23	61	10	23	22	43	1.83
1046031--1046185	33	4.5	33	87	6	211	12	23	19	45	1.84
1046121--1046183	20	3.2	20	78	17	76	15	23	15	44	1.86
1047825--1048203	94	4.1	94	92	3	613	22	12	18	46	1.82
1047825--1048203	187	2.0	187	91	4	613	22	12	18	46	1.82
1048306--1048332	14	1.9	14	100	0	54	48	29	14	7	1.71
1048291--1048357	19	3.8	19	81	18	99	46	31	16	5	1.71
1048405--1048527	20	6.2	20	92	0	183	21	18	20	39	1.93
1049004--1049045	21	2.2	19	87	12	59	21	35	19	23	1.96
1050358--1050426	34	2.1	34	94	2	122	44	18	23	13	1.84
1050436--1050500	19	3.4	19	95	0	121	15	18	16	49	1.80
1050505--1050593	20	4.4	20	82	2	108	19	22	24	33	1.97
1053003--1053049	24	2.0	24	91	0	76	36	14	21	27	1.93
1053896--1053947	19	2.7	19	90	3	77	19	19	30	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1053899--1054114	20	10.7	20	79	6	195	18	17	24	39	1.92
1053920--1054114	101	1.9	102	88	3	295	18	16	24	40	1.91
1053901--1054114	41	5.3	40	83	3	234	18	17	24	39	1.92
1053920--1054133	61	3.5	59	80	8	218	17	16	24	41	1.89
1063453--1063556	10	9.7	11	71	20	62	74	0	15	9	1.13
1063455--1063582	20	6.1	20	73	21	84	75	0	15	7	1.06
1063453--1063567	31	3.6	31	68	18	83	75	0	14	8	1.08
1063457--1063610	20	7.2	20	71	19	82	75	0	17	6	1.05
1063556--1063608	23	2.3	23	83	6	63	75	0	22	1	0.90
1067181--1067890	134	5.3	134	80	3	741	33	21	15	29	1.94
1068061--1068104	3	14.7	3	100	0	88	31	0	0	68	0.90
1076352--1076390	20	2.0	20	89	0	60	33	28	7	30	1.85
1078189--1078216	2	14.0	2	100	0	56	50	0	0	50	1.00
1083887--1083911	12	2.1	12	100	0	50	16	24	0	60	1.36
1085578--1085622	24	1.9	24	86	4	65	20	0	6	73	1.05
1085664--1085714	23	2.2	23	89	0	75	35	5	9	49	1.60
1092015--1092042	2	14.0	2	100	0	56	50	0	0	50	1.00
1092388--1092444	2	28.5	2	100	0	114	50	0	0	49	1.00
1093220--1093297	32	2.4	32	100	0	156	32	29	24	14	1.94
1095760--1095810	15	3.4	15	91	0	84	7	66	17	7	1.41
1095749--1095776	11	2.5	11	100	0	56	7	67	17	7	1.37
1098898--1099029	32	4.1	33	76	16	118	30	26	24	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1098903--1099027	64	2.0	63	83	12	157	29	28	22	20	1.98
1099556--1099599	17	2.6	17	100	0	88	34	6	11	47	1.66
1100262--1100345	21	4.0	21	90	0	123	36	27	11	23	1.90
1100262--1100345	42	2.0	42	92	0	141	36	27	11	23	1.90
1101986--1102046	23	2.7	23	84	0	77	19	22	19	37	1.94
1108926--1108966	21	2.0	21	95	0	73	31	17	14	36	1.90
1108932--1108984	21	2.4	21	84	6	61	33	13	18	33	1.90
1109066--1109115	23	2.2	23	85	0	64	18	24	20	38	1.93
1114237--1114286	21	2.4	21	86	6	66	40	20	12	28	1.87
1122362--1122418	30	1.9	30	100	0	114	43	19	14	22	1.86

Tables:   1   2   3   4   5   6   7   8   9