genome.fa.s8136.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008136.1 Hibiscus syriacus cultivar Beakdansim tig00110691_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1585607

Tables:   1   2   3   4   5   6   7   8   9   

This is table  8  of  9  ( 1001 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1315407--1315482	36	2.1	35	87	2	107	30	1	25	43	1.63
1317453--1317518	31	2.1	31	97	0	123	36	24	18	21	1.95
1325143--1325190	2	24.0	2	100	0	96	50	0	0	50	1.00
1327829--1327889	14	4.5	13	72	13	52	39	4	0	55	1.21
1336699--1336766	17	4.1	16	83	9	75	58	2	0	38	1.13
1348958--1349031	34	2.2	34	100	0	148	39	0	0	60	0.97
1355795--1355841	20	2.5	18	77	12	58	23	21	8	46	1.78
1356698--1356763	22	3.2	21	68	19	50	22	6	10	60	1.51
1359337--1359390	20	2.6	22	82	8	69	27	14	27	29	1.95
1359359--1359476	53	2.2	54	86	7	170	27	18	23	29	1.98
1359861--1359910	21	2.4	21	96	3	93	36	10	24	30	1.88
1360047--1360099	21	2.5	21	87	0	79	24	13	30	32	1.93
1366740--1366790	21	2.4	21	86	0	75	31	11	27	29	1.92
1366920--1367029	21	5.0	23	75	21	103	23	17	27	31	1.97
1375134--1375167	5	7.0	5	86	6	52	58	0	2	38	1.13
1375630--1375665	16	2.2	16	95	0	63	44	2	25	27	1.68
1376230--1376406	28	6.1	28	81	10	205	44	31	7	16	1.76
1376231--1376404	55	3.0	57	84	8	210	45	29	8	16	1.76
1376390--1376470	33	2.5	33	82	4	103	38	25	6	29	1.80
1376900--1377013	58	2.0	57	96	3	212	43	10	14	31	1.79
1378698--1378727	15	2.0	15	93	0	51	46	30	6	16	1.73
1379216--1379280	18	3.3	18	75	22	67	33	15	16	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1381778--1381902	24	5.2	24	87	0	178	42	17	13	26	1.86
1382068--1382107	21	1.9	21	84	0	53	45	10	0	45	1.37
1382594--1382649	28	1.9	30	85	7	80	51	16	1	30	1.54
1382593--1382656	29	2.2	28	81	8	76	48	18	1	31	1.58
1388836--1388957	24	5.1	24	90	0	181	42	18	12	26	1.86
1389670--1389732	29	2.2	29	85	2	83	50	19	0	30	1.47
1393186--1393272	35	2.5	34	80	12	97	55	10	8	26	1.61
1395385--1395717	111	3.0	111	96	0	603	44	11	8	36	1.70
1395998--1396122	50	2.5	49	81	1	142	21	28	33	16	1.95
1397349--1397381	3	11.3	3	87	6	50	39	0	0	60	0.97
1399263--1399297	17	2.0	18	88	5	54	25	8	0	65	1.21
1402280--1402326	21	2.3	21	85	3	60	17	10	8	63	1.49
1402293--1402338	20	2.2	21	88	3	67	17	10	8	63	1.51
1402315--1402351	12	2.8	14	80	16	51	21	8	2	67	1.29
1402324--1402350	12	2.2	12	100	0	54	22	7	0	70	1.12
1402302--1402345	20	2.2	20	83	0	52	18	6	6	68	1.35
1407786--1407951	54	3.1	53	87	0	233	36	13	24	25	1.93
1408312--1408369	22	2.6	23	86	8	84	34	10	13	41	1.79
1409069--1409277	45	5.0	37	77	12	130	26	22	19	32	1.97
1409106--1409296	45	4.3	45	89	1	278	26	21	19	31	1.97
1409046--1409303	90	3.0	87	82	9	330	25	22	19	32	1.97
1409314--1409417	45	2.3	45	91	3	165	27	19	17	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1409196--1409670	121	3.9	121	87	4	683	26	21	19	32	1.97
1409196--1409670	240	2.0	240	90	4	751	26	21	19	32	1.97
1409435--1409538	45	2.3	45	86	3	138	28	23	18	29	1.97
1409480--1409625	77	1.9	76	88	4	222	28	20	20	30	1.98
1409558--1409788	45	5.1	44	87	4	318	25	20	21	32	1.98
1409969--1410042	3	24.3	3	86	8	105	39	0	0	60	0.97
1409969--1410042	28	2.7	28	93	2	123	39	0	0	60	0.97
1410777--1410810	17	2.0	18	88	11	54	64	0	23	11	1.26
1411162--1411260	45	2.2	45	87	3	146	25	20	22	32	1.98
1411449--1411524	3	25.3	3	89	5	118	38	0	0	61	0.96
1412265--1412298	17	2.0	18	88	11	54	64	0	23	11	1.26
1412859--1412902	16	2.7	17	79	10	56	20	13	4	61	1.50
1413101--1413176	31	2.6	28	72	13	71	27	5	3	63	1.34
1413497--1413552	2	28.5	2	92	3	96	50	0	0	50	1.00
1415150--1415184	2	18.5	2	88	11	56	45	0	0	54	0.99
1415260--1415361	6	17.2	6	69	23	56	15	5	0	77	1.01
1415293--1415362	27	2.5	28	79	11	81	14	5	1	78	1.00
1415281--1415362	11	8.0	10	72	10	51	14	4	1	79	0.96
1415302--1415376	23	2.8	27	75	21	77	12	8	2	77	1.08
1415372--1415530	38	4.2	37	74	14	96	12	13	2	71	1.25
1415391--1415464	37	2.0	38	82	12	91	16	10	0	72	1.10
1415439--1415530	19	4.9	19	70	13	75	10	13	3	72	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1415466--1415511	15	3.1	15	84	9	51	8	10	6	73	1.23
1415485--1415515	14	2.1	15	94	5	55	12	12	0	74	1.08
1419473--1419667	99	2.0	99	85	2	266	35	17	16	30	1.92
1420818--1421732	85	10.7	85	83	2	1037	35	21	17	24	1.95
1420818--1421690	342	2.6	341	85	2	1121	35	21	18	24	1.95
1420818--1421725	256	3.5	257	85	2	1148	36	21	17	24	1.95
1423094--1423139	21	2.2	20	79	20	51	43	6	6	43	1.56
1423411--1423556	68	2.1	68	94	0	256	30	7	13	48	1.70
1423553--1423895	169	2.0	169	98	0	668	32	12	15	40	1.84
1428710--1428778	10	7.1	9	73	15	57	11	27	28	31	1.92
1428710--1428778	20	3.5	20	79	14	74	11	27	28	31	1.92
1428789--1428831	22	2.0	22	90	0	68	18	44	25	11	1.84
1430583--1430683	2	52.5	2	81	7	111	43	3	0	51	1.27
1430685--1430761	35	2.3	34	86	10	106	18	7	1	72	1.15
1430757--1430791	3	11.7	3	88	11	54	31	0	2	65	1.07
1430905--1430950	15	3.1	15	84	12	67	19	8	0	71	1.11
1430898--1430955	19	3.1	19	81	18	61	17	6	0	75	1.01
1430893--1430983	30	3.0	30	80	6	94	15	10	1	72	1.17
1430887--1431041	83	1.9	83	83	5	206	13	12	2	71	1.24
1435020--1435046	2	13.5	2	100	0	54	0	0	48	51	1.00
1438367--1438654	90	3.2	89	90	1	441	27	18	20	34	1.95
1438630--1438711	42	2.0	42	92	4	139	23	19	18	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1446199--1446257	28	2.1	28	87	3	82	42	1	6	49	1.39
1446500--1446530	7	4.4	7	100	0	62	61	0	0	38	0.96
1448116--1448147	2	17.0	2	87	12	50	50	0	0	50	1.00
1448756--1449234	145	3.3	145	79	6	423	22	23	22	31	1.98
1449795--1450132	112	3.0	111	93	2	545	28	17	23	30	1.97
1450017--1450508	134	3.7	134	91	1	781	28	18	22	30	1.97
1450017--1450508	267	1.8	269	91	1	810	28	18	22	30	1.97
1451126--1451198	30	2.4	30	93	0	119	30	26	19	24	1.98
1451172--1451265	31	3.1	30	75	4	89	30	23	18	27	1.97
1451181--1451276	31	3.1	30	74	12	88	32	20	19	27	1.97
1452249--1452321	30	2.4	30	93	0	119	30	26	19	24	1.98
1452295--1452388	31	3.1	30	75	4	89	30	23	18	27	1.97
1452304--1452399	31	3.1	30	74	12	88	32	20	19	27	1.97
1453371--1453443	30	2.4	30	93	0	119	30	26	19	24	1.98
1453417--1453510	31	3.1	30	75	4	89	30	23	18	27	1.97
1453426--1453521	31	3.1	30	74	12	88	32	20	19	27	1.97
1458076--1458148	30	2.4	30	95	0	128	30	24	20	24	1.99
1458122--1458215	31	3.1	30	75	4	89	30	23	18	27	1.97
1458131--1458225	31	3.1	30	73	13	86	31	21	20	27	1.97
1460419--1460540	43	2.8	43	86	0	154	21	19	29	29	1.98
1460815--1460876	32	1.9	32	93	0	106	33	27	9	29	1.88
1461926--1461973	21	2.4	20	89	6	71	0	14	10	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1461963--1461996	17	1.9	18	88	5	52	0	14	0	85	0.60
1465341--1465482	55	2.6	55	86	6	198	21	22	14	42	1.88
1468065--1468546	145	3.3	145	79	5	508	21	24	20	32	1.98
1468063--1468598	290	1.9	288	79	6	618	22	24	21	32	1.98
1469922--1470402	240	2.0	240	95	1	867	36	17	12	34	1.87
1472913--1473026	42	2.7	42	91	0	183	28	14	23	33	1.94
1473003--1473266	118	2.3	118	83	1	307	25	23	16	34	1.95
1474717--1475257	53	10.1	53	85	6	603	39	19	11	29	1.86
1481683--1481834	65	2.3	65	88	1	232	48	14	18	18	1.81
1481685--1481851	65	2.6	65	84	2	174	47	14	19	17	1.82

Tables:   1   2   3   4   5   6   7   8   9