genome.fa.s8136.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008136.1 Hibiscus syriacus cultivar Beakdansim tig00110691_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1585607

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1001 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1485921--1485972	21	2.5	21	81	3	61	44	7	13	34	1.72
1489664--1489810	42	3.5	42	85	1	199	28	19	22	29	1.98
1490039--1490102	17	3.5	17	71	19	56	20	28	7	43	1.79
1490032--1490133	39	2.6	39	96	0	186	24	27	10	37	1.89
1490059--1490120	19	3.2	19	66	20	56	20	30	11	37	1.88
1490056--1490124	22	3.4	22	69	19	76	18	31	10	39	1.84
1489839--1490340	245	2.1	243	87	3	706	26	20	16	35	1.94
1490321--1490503	79	2.3	79	91	1	287	25	20	16	37	1.93
1490398--1490649	118	2.1	118	86	2	337	25	22	13	37	1.92
1490247--1490621	197	1.9	197	88	1	563	25	21	15	36	1.93
1492077--1492294	54	3.9	57	85	7	170	38	20	9	31	1.84
1492137--1492427	54	5.4	54	88	1	404	40	19	9	30	1.84
1492137--1492428	109	2.7	106	86	3	397	40	20	9	30	1.84
1494500--1494548	9	4.9	9	77	22	53	4	18	0	77	0.92
1494500--1494544	21	2.0	22	91	8	74	4	17	0	77	0.92
1497991--1498245	140	1.8	139	81	6	320	42	13	13	30	1.82
1501905--1501939	17	2.0	17	88	5	52	40	0	11	48	1.39
1509174--1509232	21	2.7	21	84	10	66	23	35	25	15	1.94
1513531--1513597	30	2.2	30	81	5	82	65	2	0	31	1.07
1514027--1514065	2	19.5	2	100	0	78	51	0	0	48	1.00
1515241--1515275	4	8.5	4	93	6	61	77	0	0	22	0.78
1517645--1517771	34	3.7	34	70	10	114	20	9	16	53	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1517641--1517770	69	1.9	69	93	0	224	20	10	16	53	1.70
1536876--1536917	21	2.0	21	95	0	75	26	28	21	23	1.99
1537094--1537183	30	3.0	30	91	3	146	40	16	7	35	1.78
1553811--1553915	46	2.2	48	86	5	142	32	23	21	21	1.98
1553811--1553914	23	4.4	23	76	3	91	31	24	22	22	1.98
1553955--1553991	2	18.5	2	100	0	74	51	0	0	48	1.00
1554080--1554120	15	2.7	16	81	11	59	31	17	12	39	1.86
1554644--1554693	20	2.5	20	87	6	66	22	26	14	38	1.91
1555425--1555499	31	2.4	31	79	2	87	26	32	26	14	1.95
1555377--1555499	63	2.0	63	82	9	153	26	29	27	17	1.97
1558369--1558451	19	4.6	19	82	14	113	18	34	30	16	1.93
1558393--1558459	14	4.4	14	77	17	71	19	35	29	14	1.92
1558375--1558459	33	2.6	33	92	0	143	20	35	29	15	1.93
1560519--1560594	31	2.4	31	80	2	89	26	31	27	14	1.95
1560472--1560594	63	2.0	63	82	6	151	25	29	28	17	1.97
1563456--1563538	19	4.6	19	82	14	113	18	34	30	16	1.93
1563480--1563546	14	4.4	14	77	17	71	19	35	29	14	1.92
1563462--1563546	33	2.6	33	92	0	143	20	35	29	15	1.93
1572613--1572642	15	2.0	15	100	0	60	60	0	20	20	1.37

Tables:   1   2   3   4   5   6   7   8   9

The End!