Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008180.1 Hibiscus syriacus cultivar Beakdansim tig00110777_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2670214

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1585 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2587773--2588168
201
2.0
201
97
1
749
31
18
6
43
1.76
2591535--2592262
364
2.0
364
98
0
1402
26
11
13
49
1.76
2600633--2600942
168
1.8
171
92
2
536
48
19
6
25
1.72
2601045--2601088
23
2.0
23
86
4
63
38
22
13
25
1.91
2603318--2603374
25
2.3
25
96
0
105
28
1
3
66
1.18
2614213--2615010
399
2.0
399
99
0
1587
40
14
12
32
1.83
2617642--2617797
31
5.0
31
95
1
269
19
18
23
39
1.93
2620864--2621020
64
2.5
64
84
4
183
35
21
17
26
1.95
2621635--2621717
31
2.7
31
94
3
141
18
19
24
38
1.93
2625926--2625984
29
2.0
29
100
0
118
49
13
13
23
1.78
2629460--2629539
36
2.2
36
88
2
117
46
17
3
32
1.66
2632819--2632850
15
2.1
15
94
0
55
6
25
15
53
1.65
2634065--2634133
21
3.2
21
76
8
84
46
15
4
33
1.66
2634565--2634613
22
2.2
22
78
7
55
18
12
12
57
1.65
2634571--2634612
22
2.0
22
85
4
59
21
7
14
57
1.61
2637668--2637712
21
2.1
21
87
0
63
31
28
24
15
1.96
2639411--2639477
22
3.0
22
95
2
116
19
26
28
25
1.99
2642619--2642663
21
2.1
21
87
0
63
31
28
24
15
1.96
2644359--2644425
22
3.0
22
95
2
116
19
26
28
25
1.99
2645398--2645432
17
2.0
18
94
5
63
57
0
2
40
1.14
2654625--2654683
24
2.5
24
85
0
91
40
1
33
23
1.65
2657981--2658025
23
2.0
23
81
0
54
15
2
11
71
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2667001--2667082
38
2.2
38
90
0
128
32
21
29
15
1.95
2668695--2668855
58
2.7
58
78
11
152
44
6
19
29
1.75
2669569--2669904
115
2.9
115
84
5
421
34
18
8
38
1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!