genome.fa.s8180.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008180.1 Hibiscus syriacus cultivar Beakdansim tig00110777_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2670214

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  3  of  14  ( 1585 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452477--452517	21	2.0	21	100	0	82	2	39	24	34	1.69
462222--462382	41	4.0	41	84	7	213	30	19	14	34	1.92
462223--462381	82	2.0	81	92	3	266	30	20	14	35	1.92
462411--462610	42	4.8	42	76	8	156	25	22	19	33	1.97
463327--463363	19	1.9	19	88	0	56	32	21	16	29	1.95
463389--463542	20	7.6	20	76	11	143	31	24	18	24	1.98
463389--463564	41	4.3	41	91	2	257	33	23	18	24	1.97
463715--463757	22	2.0	22	95	0	77	20	41	16	20	1.90
464133--464246	20	6.1	20	73	13	89	17	17	23	41	1.90
464133--464271	73	1.9	73	84	0	188	22	15	20	41	1.89
466155--466223	20	3.5	20	92	4	104	34	26	23	15	1.95
466155--466261	20	5.7	20	75	12	100	38	24	21	15	1.92
466319--466387	20	3.5	20	84	7	95	17	18	26	37	1.93
466374--466416	19	2.2	20	91	4	70	13	13	23	48	1.79
468367--468405	14	2.8	14	96	0	69	35	0	17	46	1.49
468527--468580	20	2.7	20	82	5	65	40	27	18	12	1.87
468574--468813	20	12.6	20	78	10	236	25	19	22	32	1.97
468784--469066	140	2.0	140	97	0	539	42	14	13	28	1.84
469124--469158	18	1.9	18	94	0	61	17	2	25	54	1.57
470879--470915	14	2.6	14	91	4	56	5	21	21	51	1.68
471105--471158	24	2.2	24	93	0	90	40	20	18	20	1.91
471882--471989	20	5.3	20	76	10	94	25	19	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472004--472049	19	2.4	19	85	3	56	21	17	30	30	1.96
472015--472051	19	1.9	19	94	0	65	21	16	29	32	1.95
479064--479114	7	7.3	7	82	8	68	13	27	56	1	1.48
481634--481665	17	1.9	16	93	6	55	0	25	18	56	1.42
482914--482984	28	2.5	28	71	8	65	69	0	5	25	1.10
491439--491467	2	14.5	2	100	0	58	51	0	0	48	1.00
493344--493463	35	3.4	35	93	2	204	33	20	25	20	1.97
493323--493463	71	2.0	68	90	4	219	37	18	25	18	1.93
494189--494216	2	14.0	2	100	0	56	0	50	0	50	1.00
495634--495677	23	1.9	23	86	9	63	4	18	9	68	1.34
502448--502531	2	42.0	2	100	0	168	50	0	0	50	1.00
508819--508917	47	2.1	46	80	10	112	48	1	1	49	1.14
512229--512368	60	2.3	61	81	4	169	35	21	6	37	1.79
512192--512367	59	2.9	58	77	5	172	35	21	6	36	1.79
515546--515596	19	2.7	19	90	6	77	41	15	17	25	1.89
516950--517102	83	1.8	83	85	0	216	35	19	16	28	1.94
516958--517197	83	2.9	83	73	8	188	37	22	13	26	1.91
518626--518651	2	13.0	2	100	0	52	50	0	0	50	1.00
519358--519683	45	7.2	45	84	0	402	30	19	10	39	1.85
519969--520191	95	2.3	96	80	7	222	28	25	12	34	1.92
520159--520234	21	3.6	21	79	15	68	27	26	14	31	1.95
522214--522262	2	24.5	2	100	0	98	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522839--522872	14	2.4	14	100	0	68	14	35	0	50	1.44
524454--524502	20	2.5	19	86	3	62	36	8	18	36	1.81
527008--527065	18	3.1	18	85	11	80	31	12	8	48	1.70
527277--527325	19	2.6	19	93	0	89	36	4	18	40	1.70
527313--527368	20	2.8	20	83	0	76	33	10	21	33	1.88
527277--527368	39	2.4	39	83	3	105	34	8	19	36	1.83
528624--528943	45	7.1	45	85	0	370	30	19	10	40	1.85
528733--528982	135	1.9	134	84	5	342	29	20	11	38	1.88
529340--529395	22	2.7	20	81	10	76	28	25	14	32	1.94
529379--529538	72	2.2	72	83	7	198	30	22	15	31	1.95
529506--529582	21	3.6	21	77	10	84	25	24	16	32	1.96
530574--530636	23	2.7	23	76	16	58	53	4	4	36	1.43
536758--536802	21	2.1	21	87	4	63	37	28	17	15	1.91
536758--536848	23	4.1	22	77	7	67	35	26	20	17	1.95
536766--536855	44	2.0	46	82	4	112	34	24	23	17	1.96
536786--536855	23	3.0	23	82	0	86	34	24	24	17	1.96
536944--536992	16	3.1	16	74	11	55	30	20	6	42	1.76
538590--538941	142	2.4	145	93	5	601	34	20	17	27	1.95
539832--539885	22	2.4	22	84	9	65	35	22	0	42	1.54
539932--539966	18	1.9	18	88	11	54	22	17	5	54	1.64
543836--543880	23	2.0	23	86	0	63	26	28	24	20	1.99
543859--544309	149	3.0	149	97	0	843	34	19	17	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545291--545325	18	1.9	18	88	11	54	22	17	5	54	1.64
556693--556758	33	2.0	33	100	0	132	33	21	18	27	1.96
557235--557286	26	2.1	25	82	7	61	17	13	1	67	1.32
561563--561613	26	2.1	25	85	10	70	43	0	23	33	1.54
574853--574974	24	5.2	23	75	10	86	57	16	14	11	1.65
574873--574933	10	5.5	10	71	21	50	54	19	16	9	1.70
575139--575189	14	3.6	14	97	0	93	62	13	7	15	1.52
578094--578176	23	3.6	23	77	3	94	57	16	10	14	1.64
583044--583097	20	2.7	20	77	11	74	27	31	14	25	1.95
584059--584112	24	2.2	24	90	0	81	22	18	18	40	1.91
585607--585670	23	2.8	23	87	0	92	26	25	28	20	1.99
585686--585903	103	2.1	103	93	0	373	36	22	13	27	1.92
591181--591229	2	23.5	2	87	8	71	48	6	0	44	1.27
591486--591549	23	2.8	23	78	4	76	28	23	26	21	1.99
591557--591781	103	2.2	102	92	2	371	37	23	12	25	1.91
596089--596113	2	12.5	2	100	0	50	48	0	0	52	1.00
598231--598266	18	2.0	18	94	0	63	55	22	2	19	1.56
598679--598728	25	2.0	25	96	0	91	26	8	22	44	1.80
599106--599158	24	2.2	24	86	0	70	35	1	13	49	1.53
599419--599505	39	2.2	39	95	0	156	47	21	13	17	1.82
599707--599762	20	2.8	20	88	0	85	16	17	25	41	1.89
599821--599962	62	2.2	63	85	7	180	50	16	1	30	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
601314--601386	21	3.5	21	70	10	60	21	19	31	27	1.97
603598--603622	13	1.9	13	100	0	50	80	8	8	4	1.03
603840--603890	22	2.3	22	96	0	93	21	13	43	21	1.87
604018--604062	20	2.2	20	96	0	81	17	17	24	40	1.91
604027--604163	20	6.7	21	74	14	99	27	16	24	30	1.97
608726--609018	30	10.0	29	69	14	79	57	7	17	17	1.63
608884--608998	30	3.9	30	76	8	94	54	6	20	19	1.64
611400--611780	149	2.6	149	89	0	566	36	17	13	33	1.88
611857--612209	149	2.4	149	88	0	510	35	16	13	34	1.88
611428--612757	429	3.1	429	98	0	2573	35	15	14	34	1.89
612285--612622	149	2.3	149	89	2	504	35	15	13	34	1.88
613707--614034	42	7.8	41	88	6	451	32	24	24	18	1.97
613707--614034	84	3.9	84	92	2	516	32	24	24	18	1.97
614965--615115	29	5.4	28	75	14	132	43	20	5	31	1.74
614965--615115	55	2.7	57	80	9	184	43	20	5	31	1.74
614975--615131	84	1.9	84	83	2	208	43	19	5	31	1.72
621224--621554	42	7.8	41	85	6	430	31	23	24	19	1.98
621224--621554	84	3.9	84	90	2	495	31	23	24	19	1.98
622480--622570	29	3.2	29	84	1	103	43	15	5	35	1.70
622524--622635	29	3.8	29	73	9	100	41	21	7	29	1.79
622699--622730	11	3.1	11	91	8	50	34	25	18	21	1.96
635651--635703	21	2.5	21	81	6	72	20	26	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
635693--635744	21	2.5	21	81	3	61	38	19	23	19	1.93
635712--635805	41	2.3	43	80	9	115	36	22	19	22	1.95
635733--635860	20	6.3	21	82	3	88	29	25	17	27	1.98
635775--635882	20	5.4	20	92	2	155	24	26	20	28	1.99
636624--636670	24	2.0	24	91	0	76	23	17	21	38	1.93
636845--636869	12	2.1	12	100	0	50	72	0	28	0	0.86
639150--639225	20	3.8	20	94	0	125	39	22	22	15	1.92
639266--639308	19	2.3	19	95	0	77	18	20	13	46	1.83
639448--639486	14	2.8	14	92	0	60	48	17	0	33	1.48
640893--640983	42	2.2	42	84	3	123	23	14	39	23	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14