genome.fa.s8180.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008180.1 Hibiscus syriacus cultivar Beakdansim tig00110777_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2670214

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1585 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202984--203118	41	3.3	41	81	6	123	37	20	21	20	1.94
203046--203140	20	4.7	20	80	2	91	34	24	17	23	1.96
203328--203371	22	2.0	22	95	0	79	20	45	15	18	1.85
203636--203673	20	1.9	20	88	0	58	13	15	21	50	1.78
204992--205036	18	2.5	18	85	0	63	26	42	15	15	1.87
205509--205593	20	4.4	19	83	5	91	40	23	22	14	1.90
205509--205629	19	6.6	19	77	13	101	42	23	21	13	1.88
205655--205758	19	5.4	19	83	4	111	14	21	24	40	1.90
205666--205739	39	1.9	38	88	2	112	14	24	22	37	1.92
207608--207643	14	2.6	14	90	0	54	30	0	22	47	1.52
207750--207826	14	4.7	15	74	22	59	45	19	22	12	1.84
207760--207826	18	3.8	19	81	18	92	46	17	22	13	1.83
209528--209586	24	2.5	24	88	0	82	30	16	16	35	1.92
209761--209785	12	2.1	12	100	0	50	72	0	28	0	0.86
212082--212140	19	3.4	19	73	22	74	45	18	22	13	1.84
212082--212171	33	2.7	33	96	0	162	42	18	24	14	1.88
212167--212231	19	3.7	19	70	19	68	12	24	20	43	1.86
212338--212374	14	2.6	15	87	12	60	48	21	0	29	1.50
213731--213797	21	3.2	21	68	4	55	19	20	35	23	1.95
213770--213851	42	2.0	42	85	0	110	24	17	36	21	1.94
215855--216039	19	10.1	19	77	14	174	43	22	22	12	1.86
215855--216039	33	5.1	38	81	10	174	43	22	22	12	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
216039--216075	19	1.9	19	88	0	56	10	16	21	51	1.74
216629--216722	20	4.7	20	77	2	80	23	17	24	35	1.95
216711--216806	41	2.3	41	96	0	138	18	22	17	40	1.91
216711--216803	20	4.6	20	75	4	87	18	23	18	39	1.92
222010--222050	18	2.5	15	79	20	55	68	14	2	14	1.32
222572--222621	20	2.4	21	80	10	57	34	18	20	28	1.95
228735--228778	23	1.9	23	86	9	63	6	18	15	59	1.58
228731--228785	24	2.4	24	76	14	62	7	20	14	58	1.60
233937--233961	12	2.1	12	100	0	50	28	16	16	40	1.89
249459--249893	232	1.9	232	97	0	816	23	20	21	35	1.96
249033--251127	830	2.5	830	99	0	4145	27	15	19	37	1.92
250289--250723	232	1.9	232	97	0	816	23	20	21	35	1.96
252541--252598	26	2.1	27	90	6	91	46	29	6	17	1.74
256118--256175	29	2.0	30	96	3	109	34	5	15	44	1.69
257608--257654	19	2.4	20	89	3	69	48	6	14	29	1.69
258797--258854	19	3.0	19	78	12	73	29	6	12	51	1.65
258957--259025	30	2.2	30	82	15	86	36	4	17	42	1.69
258967--259025	30	2.0	30	93	6	102	33	5	16	44	1.70
259584--259653	34	2.1	32	86	5	95	35	15	25	22	1.94
262998--263039	19	2.1	21	86	8	61	28	16	11	42	1.84
267965--268027	23	2.8	23	87	2	101	33	25	26	14	1.94
274607--274633	13	2.1	13	100	0	54	44	0	22	33	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274647--275157	253	2.0	254	88	1	765	44	8	8	38	1.65
278761--278817	31	1.9	30	85	7	80	47	1	1	49	1.22
281623--281674	23	2.2	24	86	3	70	44	5	9	40	1.61
282059--282101	21	2.0	23	86	9	63	2	16	16	65	1.38
282271--282300	15	2.0	15	93	0	51	43	20	6	30	1.77
289088--289118	16	2.0	16	93	6	55	41	0	0	58	0.98
289212--289267	29	1.9	29	85	7	78	39	12	19	28	1.88
289279--289312	17	2.0	17	100	0	68	41	17	29	11	1.85
289517--289541	11	2.3	11	100	0	50	76	0	0	24	0.80
296529--296571	21	2.0	22	86	4	61	13	16	25	44	1.85
297201--297465	118	2.2	117	83	2	316	39	11	18	31	1.86
297325--297978	226	2.9	224	87	3	902	38	12	16	32	1.86
298743--298795	19	2.8	19	91	0	88	20	20	30	28	1.98
299521--299549	14	2.0	15	93	6	51	62	27	3	6	1.37
307347--307491	64	2.2	65	85	6	188	25	19	25	29	1.98
309405--309819	183	2.3	183	93	0	704	28	14	13	42	1.85
309644--309982	163	2.1	163	89	0	516	29	15	12	43	1.82
309459--310875	346	4.0	346	83	10	1748	28	14	13	43	1.82
309807--310397	183	3.2	182	88	1	889	29	13	12	44	1.81
310262--310922	183	3.8	169	82	7	689	28	14	13	43	1.84
310389--310922	182	2.9	183	90	1	851	28	15	13	43	1.84
309406--310924	527	2.9	523	87	3	2163	28	14	13	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317329--317361	11	3.0	11	90	0	57	66	9	0	24	1.20
330017--330049	16	2.1	16	100	0	66	63	18	12	6	1.48
330798--330828	15	2.1	15	93	0	53	54	0	9	35	1.33
336142--336188	19	2.5	19	92	0	76	19	8	27	44	1.79
335974--336169	44	4.5	43	79	2	160	27	16	22	32	1.96
336098--336225	63	2.0	63	87	0	184	24	14	24	36	1.93
336552--336593	22	2.0	22	86	13	61	0	35	19	45	1.50
344577--345015	219	2.0	219	93	0	745	37	7	21	33	1.82
346810--346849	2	20.0	2	100	0	80	50	0	0	50	1.00
350244--350401	64	2.5	64	78	2	165	33	18	21	26	1.96
351329--351373	2	22.5	2	100	0	90	51	0	0	48	1.00
351547--351584	2	19.0	2	100	0	76	50	0	0	50	1.00
351814--351877	14	4.6	14	81	11	78	32	12	21	32	1.91
351814--351877	28	2.3	28	100	0	128	32	12	21	32	1.91
352461--352613	83	1.8	83	83	2	200	37	16	16	29	1.91
353621--353669	22	2.2	22	88	0	80	32	10	10	46	1.71
354254--354394	42	3.4	42	76	8	144	32	22	14	29	1.94
356068--356106	18	2.2	18	100	0	78	33	12	10	43	1.77
357164--357195	17	1.9	16	93	6	55	50	0	0	50	1.00
361871--361939	34	2.0	34	100	0	138	31	5	20	42	1.76
364009--364226	103	2.1	103	95	0	391	26	13	22	37	1.92
364233--364310	23	3.3	23	81	1	93	24	20	23	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369439--369652	103	2.1	103	96	0	392	26	11	24	37	1.89
369663--369740	23	3.3	23	78	1	84	25	20	21	32	1.98
379169--379203	18	1.9	18	88	0	52	17	20	17	45	1.85
380266--380376	31	3.4	31	68	16	89	39	18	19	22	1.92
380264--380390	67	1.9	67	90	0	200	39	19	18	22	1.93
381811--381859	22	2.2	22	85	0	62	36	26	18	18	1.94
388497--388556	23	2.6	23	84	5	77	30	23	28	18	1.98
390283--390337	21	2.7	21	88	2	85	21	21	25	30	1.98
395362--395417	21	2.7	21	86	5	78	25	21	23	30	1.99
400237--400291	21	2.6	21	88	0	83	21	21	25	30	1.98
400352--400394	21	2.0	21	95	0	77	23	23	25	27	2.00
400197--400398	111	1.8	111	96	0	377	24	24	20	30	1.99
434526--434582	29	2.0	29	92	0	96	17	33	29	19	1.95
434600--434624	12	2.1	12	100	0	50	40	8	36	16	1.77
434653--434737	29	2.9	29	94	0	152	12	37	29	20	1.90
434741--434825	33	2.6	33	86	3	109	9	38	27	24	1.86
434753--434868	10	10.7	10	70	15	54	10	35	31	23	1.88
434812--434896	14	6.0	14	75	22	88	8	29	40	22	1.83
434778--434902	57	2.2	57	86	2	180	9	32	35	22	1.87
434826--434868	19	2.2	20	88	12	63	9	30	37	23	1.86
434826--434868	10	4.4	10	83	16	63	9	30	37	23	1.86
435742--435820	39	2.0	39	97	0	149	51	8	7	31	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437856--437892	17	2.2	17	95	0	65	18	10	5	64	1.43
440347--440733	188	2.0	190	94	2	679	31	13	21	34	1.91
450223--450438	118	1.8	118	81	7	269	28	9	23	38	1.86
450685--450874	97	2.0	97	86	0	263	28	11	23	36	1.90
450782--450939	65	2.4	65	82	2	192	30	13	20	34	1.92
450647--450939	162	1.8	162	84	1	399	29	13	22	34	1.93
451860--451974	43	2.7	44	79	12	123	31	20	22	26	1.98
451876--451977	43	2.4	44	83	5	127	33	19	21	25	1.97
452441--452481	21	2.0	21	95	0	73	0	41	21	36	1.54
452451--452515	21	3.1	21	84	8	71	1	41	24	32	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14