genome.fa.s8206.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008206.1 Hibiscus syriacus cultivar Beakdansim tig00110828_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1504526

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 1041 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358238--358591	149	2.4	147	92	4	588	27	11	15	46	1.79
358564--358618	26	2.1	26	86	6	76	32	7	12	47	1.69
358479--358664	89	2.1	87	94	4	329	28	10	15	45	1.80
358614--358717	52	2.0	53	94	3	183	32	13	17	36	1.89
358704--358760	27	2.1	27	93	0	96	31	7	15	45	1.73
358716--358875	67	2.5	65	91	5	261	31	10	13	45	1.77
358705--358876	30	5.4	31	70	18	97	32	9	13	44	1.77
358882--359014	66	2.0	64	88	9	198	30	15	15	39	1.87
359303--359361	15	3.9	15	95	0	100	30	20	5	44	1.73
359698--359779	28	2.9	28	83	3	94	24	12	13	50	1.76
359798--360040	43	5.7	44	71	11	139	24	30	19	24	1.98
359891--360077	46	4.2	46	67	16	142	26	27	19	26	1.99
359798--359958	83	1.9	83	87	7	232	24	31	19	24	1.98
359808--360129	130	2.5	130	89	1	484	26	29	18	25	1.98
360334--360386	3	18.0	3	92	3	90	35	0	0	64	0.94
360873--360902	12	2.5	12	94	0	51	83	10	6	0	0.81
371300--371695	198	2.0	198	91	0	648	33	21	12	32	1.91
372054--372093	20	2.0	20	85	0	53	37	15	7	40	1.75
372047--372161	52	2.2	52	92	1	187	47	13	6	31	1.70
372107--372145	20	2.0	20	94	0	69	41	12	5	41	1.65
376789--376827	20	2.0	20	89	0	60	41	15	5	38	1.69
376737--376835	52	1.9	52	93	0	171	45	16	6	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380609--380688	11	7.2	11	73	18	51	65	1	2	31	1.14
380607--380672	13	5.5	13	75	12	61	66	0	3	30	1.06
380665--380703	19	2.1	18	85	4	51	61	2	0	35	1.10
380665--380708	18	2.4	19	84	3	54	59	4	0	36	1.18
381095--381170	2	38.0	2	100	0	152	50	0	0	50	1.00
381185--381226	12	3.6	11	80	20	50	71	0	9	19	1.13
381178--381258	5	14.6	5	71	19	54	66	2	4	25	1.24
382599--382660	6	10.0	6	81	11	54	70	0	1	27	0.96
382599--382648	19	2.7	19	81	3	57	70	0	2	28	0.99
382625--382661	13	2.9	14	88	11	53	81	0	0	18	0.70
383028--383603	121	4.7	122	81	7	668	27	19	14	38	1.90
384779--384813	18	1.9	18	94	0	61	54	5	5	34	1.48
385175--385225	23	2.3	22	90	9	86	7	13	0	78	0.96
385174--385212	17	2.3	17	90	0	60	10	12	0	76	1.01
392556--392587	15	2.1	15	94	0	55	43	9	18	28	1.81
396520--396545	10	2.6	10	100	0	52	73	0	0	26	0.84
396990--397056	13	4.8	13	71	18	55	68	0	2	28	1.04
397549--397606	17	3.5	17	72	9	57	65	3	5	25	1.29
398146--398502	176	2.0	181	96	2	670	30	23	18	28	1.97
399009--399041	3	11.0	3	93	0	57	66	3	0	30	1.06
402175--402213	20	2.0	20	90	10	62	61	2	2	33	1.23
404444--404474	16	1.9	16	93	0	53	83	0	12	3	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407359--407383	8	3.1	8	100	0	50	16	0	12	72	1.13
408857--408892	2	18.0	2	100	0	72	50	0	0	50	1.00
411200--411239	12	3.2	12	86	6	53	42	0	5	52	1.23
411449--411483	16	2.2	16	89	0	52	34	0	14	51	1.42
412238--412379	71	2.0	71	100	0	284	45	9	15	29	1.78
413011--413046	2	18.0	2	100	0	72	50	0	0	50	1.00
413219--413246	2	14.0	2	100	0	56	50	0	0	50	1.00
414769--414798	15	2.0	15	93	0	51	43	0	0	56	0.99
414854--414897	2	22.0	2	100	0	88	50	0	0	50	1.00
415120--415171	23	2.3	23	89	0	86	50	3	9	36	1.54
421428--421481	27	2.0	28	85	3	74	35	20	11	33	1.88
421710--421798	41	2.1	42	83	6	110	30	43	10	15	1.80
426936--426991	21	2.7	21	91	0	94	23	26	19	30	1.98
427668--427732	34	2.0	34	87	6	98	41	32	4	21	1.74
434223--434265	21	2.0	21	100	0	86	34	23	18	23	1.96
434804--434965	81	2.0	81	97	0	306	24	19	16	39	1.91
438636--438707	36	2.0	36	100	0	144	33	5	16	44	1.71
444089--444127	17	2.3	17	90	0	60	12	23	33	30	1.92
444260--444302	17	2.5	17	84	0	59	46	6	16	30	1.73
447993--448074	34	2.5	31	81	14	103	50	1	7	41	1.38
448794--448836	19	2.3	19	83	0	50	44	4	0	51	1.22
449536--449666	44	3.0	44	84	5	158	32	22	24	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456606--456704	45	2.2	45	98	0	171	19	34	8	38	1.81
456614--456684	21	3.2	21	64	24	56	21	29	11	38	1.88
456682--456962	6	46.8	6	96	0	517	16	50	1	31	1.52
457636--457676	19	2.2	19	95	0	73	48	17	9	24	1.76
457757--457786	14	2.1	14	100	0	60	40	0	20	40	1.52
458210--458242	12	2.8	12	95	0	57	27	15	24	33	1.95
459431--459744	60	5.2	59	84	4	362	29	19	17	33	1.94
459431--459744	120	2.6	120	85	3	400	29	19	17	33	1.94
460307--460367	32	1.9	32	96	0	113	40	18	14	26	1.89
460310--460400	32	2.8	32	83	9	107	40	18	16	24	1.90
460758--460785	14	2.0	14	100	0	56	50	7	14	28	1.69
462262--462311	26	1.9	26	87	0	73	52	4	10	34	1.54
463693--463732	21	1.9	21	89	0	62	22	15	32	30	1.94
465478--465503	2	13.0	2	100	0	52	50	0	0	50	1.00
465687--465726	2	20.0	2	100	0	80	50	0	0	50	1.00
466785--466888	45	2.3	45	85	3	129	29	8	20	41	1.82
466808--466911	45	2.3	45	83	0	136	22	9	28	39	1.85
467058--467118	26	2.2	28	80	11	65	37	0	3	59	1.14
470243--470273	15	2.1	15	93	0	53	80	3	6	9	0.99
470782--470977	11	16.9	11	65	27	56	46	3	7	41	1.49
470777--470975	14	13.7	14	66	19	79	46	3	7	42	1.48
470758--470852	33	2.9	32	83	7	102	44	2	7	46	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470800--470844	22	2.2	22	88	11	69	44	2	6	46	1.42
470830--470904	24	3.0	24	72	24	73	46	6	5	41	1.53
470884--470935	18	2.9	17	75	16	52	46	1	7	44	1.43
470920--470977	27	2.2	25	87	6	80	48	1	12	37	1.51
471369--471417	24	2.0	24	96	0	89	44	2	8	44	1.45
471429--471469	14	2.9	14	100	0	82	36	4	14	43	1.67
471734--471837	24	4.3	24	71	17	81	43	2	10	43	1.54
474524--474592	26	2.8	26	78	6	72	21	4	8	65	1.38
474880--474955	4	19.0	4	73	24	63	21	3	1	73	1.06
474856--474918	24	2.7	23	82	9	65	17	6	6	69	1.31
474852--474930	32	2.5	31	80	15	90	18	5	5	70	1.24
474849--474955	9	11.8	9	71	13	60	20	5	3	70	1.24
474880--474955	35	2.1	36	85	9	102	21	3	1	73	1.06
478161--478298	69	2.0	69	87	2	197	36	22	14	26	1.92
479223--479310	31	2.8	31	80	3	86	30	13	22	32	1.93
479951--480225	106	2.6	106	89	2	410	35	22	17	24	1.95
480473--480722	87	2.9	87	91	0	401	36	16	11	35	1.84
480849--480907	15	3.2	20	68	26	65	18	18	16	45	1.85
480808--480917	36	3.1	36	80	10	136	22	20	16	40	1.91
482182--482296	2	61.0	2	75	14	93	42	1	2	53	1.25
482487--482541	4	13.8	4	78	21	62	20	1	1	76	0.97
482463--482525	24	2.7	23	82	9	65	17	6	6	69	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482459--482537	32	2.5	31	80	15	90	18	5	5	70	1.24
482523--482592	33	2.2	31	82	5	77	21	5	4	68	1.28
483535--483599	30	2.1	31	82	2	78	35	15	10	38	1.82
488401--488462	24	2.6	24	86	0	79	25	17	20	35	1.95
490534--490901	183	2.0	183	100	0	736	31	11	22	35	1.89
492776--492842	24	2.8	24	76	0	71	25	16	19	38	1.92
500904--501069	60	2.8	60	85	2	208	39	4	19	36	1.73
501143--501273	59	2.2	58	80	10	133	35	16	14	32	1.89
511248--511289	23	1.9	23	85	9	61	35	0	2	61	1.09
511521--511555	16	2.1	16	89	5	52	68	0	0	31	0.90

Tables:   1   2   3   4   5   6   7   8   9