genome.fa.s8206.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008206.1 Hibiscus syriacus cultivar Beakdansim tig00110828_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1504526

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1041 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1362946--1363111	63	2.7	63	94	0	289	32	18	18	31	1.94
1362946--1363139	31	6.2	31	78	7	187	31	18	19	30	1.96
1371547--1371601	16	3.4	17	75	14	53	40	7	3	49	1.48
1371885--1371964	7	11.6	7	72	6	56	25	0	30	45	1.54
1371891--1371964	14	5.4	14	75	13	73	24	0	31	44	1.54
1371885--1372000	21	5.6	21	74	13	96	25	0	30	43	1.55
1373571--1373628	12	4.9	12	74	4	55	22	13	27	36	1.92
1373568--1373646	35	2.3	35	95	0	140	29	15	25	30	1.96
1376951--1377012	24	2.6	24	87	7	90	43	4	19	32	1.72
1377715--1377750	17	2.1	17	89	0	54	36	19	5	38	1.75
1380340--1380370	16	1.9	16	93	0	53	54	6	9	29	1.57
1380403--1380496	45	2.1	44	86	2	125	60	6	6	26	1.45
1383448--1383507	15	4.0	15	87	8	86	51	1	0	46	1.10
1383448--1383507	30	2.0	30	93	0	102	51	1	0	46	1.10
1383448--1383562	33	3.4	34	76	13	105	45	0	5	48	1.31
1383495--1384133	54	11.8	54	72	15	400	34	0	12	52	1.42
1383639--1384023	32	12.8	32	74	20	316	34	0	12	52	1.45
1383672--1383714	22	2.0	22	100	0	86	34	0	13	51	1.42
1383762--1383924	22	6.8	22	72	20	114	36	0	12	50	1.44
1383811--1383956	76	1.9	76	98	0	283	36	0	10	52	1.37
1383927--1383984	18	3.4	18	70	18	61	29	0	13	56	1.38
1383828--1384101	140	1.9	145	88	5	425	33	0	12	53	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1384081--1384123	22	2.0	22	95	0	77	34	0	11	53	1.37
1384147--1384206	31	1.9	31	93	0	102	43	10	6	40	1.64
1400110--1400239	60	2.2	60	80	6	147	36	13	15	34	1.86
1402788--1402883	48	2.0	48	95	0	174	36	9	16	37	1.81
1402937--1402999	32	2.0	32	87	0	90	41	14	14	30	1.85
1404096--1404150	25	2.1	26	86	6	76	49	10	1	38	1.49
1416751--1416799	17	2.8	18	81	3	64	34	8	28	28	1.86
1417276--1417338	25	2.5	25	85	10	85	36	39	6	17	1.75
1419109--1419152	22	1.9	22	86	9	61	31	6	6	54	1.53
1419252--1419277	3	8.7	3	100	0	52	65	0	0	34	0.93
1421305--1421379	31	2.4	31	84	0	96	46	14	10	28	1.78
1424048--1424105	22	2.8	20	79	10	55	39	3	1	55	1.27
1435385--1435436	22	2.3	23	83	3	61	42	0	1	55	1.10
1440775--1440806	2	16.0	2	100	0	64	50	0	0	50	1.00
1441100--1441131	16	1.9	17	93	6	57	81	0	18	0	0.70
1443400--1443739	114	3.0	114	95	0	590	33	15	19	30	1.93
1445803--1445968	54	3.1	54	92	0	278	37	15	23	24	1.93
1446326--1446404	22	3.6	22	89	0	113	32	16	13	36	1.88
1446812--1447128	113	2.8	113	93	0	528	37	15	20	26	1.92
1447068--1447165	40	2.5	40	98	0	187	47	8	24	19	1.76
1446956--1447431	163	3.0	156	91	4	620	41	12	20	26	1.88
1447058--1447431	163	2.3	163	97	0	703	41	12	20	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1447231--1447328	40	2.5	40	96	0	178	48	8	23	19	1.75
1447330--1447635	102	3.0	101	76	9	316	38	15	17	28	1.90
1449367--1449418	22	2.3	23	83	3	61	42	0	1	55	1.10
1456557--1456590	12	2.8	12	87	12	52	29	0	5	64	1.17
1457576--1458209	317	2.0	317	99	0	1241	28	13	25	32	1.93
1466317--1466413	49	2.0	49	81	0	113	34	9	9	47	1.68
1473206--1473259	22	2.5	22	96	0	99	44	9	7	38	1.65
1475453--1475501	22	2.1	22	81	7	53	57	2	2	38	1.22
1476376--1476415	21	1.9	21	84	0	53	0	12	12	75	1.06
1476952--1477003	15	3.5	15	91	0	68	61	0	7	30	1.24
1476902--1476978	3	25.7	3	97	0	145	64	0	0	35	0.93
1477282--1477812	113	4.7	113	94	0	794	28	20	13	38	1.90
1478469--1478574	52	2.1	50	85	11	139	35	22	15	26	1.93
1479723--1479819	6	16.5	6	72	18	62	2	19	0	78	0.85
1479723--1479802	21	3.8	20	79	9	88	2	17	0	80	0.83
1479722--1479822	21	4.8	22	74	19	65	1	20	0	77	0.87
1479743--1479823	14	5.8	15	71	21	61	0	23	0	76	0.79
1479741--1479823	17	4.6	17	73	20	80	0	22	0	77	0.78
1479739--1479819	39	2.1	38	86	9	110	0	20	0	79	0.74
1479746--1479814	21	3.5	20	76	7	68	0	23	0	76	0.78
1491132--1491180	22	2.1	22	81	7	53	57	2	2	38	1.22
1492056--1492094	20	1.9	21	84	5	53	0	12	12	74	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1492626--1492662	15	2.5	15	95	0	65	62	0	10	27	1.28
1492579--1492637	3	19.7	3	100	0	118	66	0	0	33	0.92
1498261--1498310	20	2.5	20	90	0	82	24	28	22	26	1.99
1499127--1499180	24	2.2	24	90	0	81	22	16	20	40	1.91
1501504--1501777	136	2.0	139	95	2	500	28	13	15	42	1.85
1501748--1501915	20	8.8	20	81	9	206	34	22	19	24	1.96
1501756--1501902	39	3.9	38	86	6	176	34	23	19	22	1.96
1501790--1501915	59	2.1	60	91	1	200	33	23	19	23	1.97
1501755--1501958	20	10.9	20	74	15	166	35	22	19	23	1.96
1501959--1502033	20	3.8	20	85	0	96	14	18	24	42	1.88
1502133--1502250	26	4.7	23	66	20	60	48	18	1	31	1.58
1502151--1502186	14	2.6	14	86	4	56	44	22	2	30	1.67
1502086--1502246	74	2.1	74	84	11	211	49	18	2	29	1.61
1503638--1503730	21	4.5	21	68	12	66	29	16	34	20	1.94
1503631--1503730	41	2.4	42	72	1	103	27	18	32	23	1.97

Tables:   1   2   3   4   5   6   7   8   9

The End!