genome.fa.s8206.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008206.1 Hibiscus syriacus cultivar Beakdansim tig00110828_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1504526

Tables:   1   2   3   4   5   6   7   8   9   

This is table  8  of  9  ( 1041 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1205620--1206043	100	4.2	101	80	6	414	37	14	9	37	1.80
1205622--1206046	102	4.2	100	80	7	396	37	14	9	37	1.80
1206410--1206484	39	1.9	39	88	0	114	32	24	13	30	1.93
1208521--1208566	23	2.0	23	83	4	58	39	4	10	45	1.59
1208822--1209120	77	3.9	77	82	3	309	35	15	9	39	1.80
1209895--1209970	36	2.1	36	85	7	100	47	1	3	47	1.29
1210369--1210582	102	2.1	102	97	0	403	50	7	5	35	1.55
1210875--1210909	2	17.5	2	100	0	70	51	0	0	48	1.00
1216868--1216969	51	2.0	52	92	1	170	24	17	20	37	1.94
1219071--1219111	2	20.5	2	100	0	82	48	0	51	0	1.00
1219632--1219686	27	2.1	27	86	3	76	30	3	12	52	1.56
1219640--1219702	27	2.3	27	81	8	65	38	3	11	47	1.55
1221548--1221603	29	1.9	29	100	0	112	14	39	28	17	1.89
1221632--1221718	10	8.5	10	71	14	52	3	29	31	35	1.74
1221633--1221728	31	3.1	31	100	0	192	3	29	32	35	1.73
1221891--1221961	29	2.4	29	97	0	133	21	23	35	19	1.96
1221955--1221979	12	2.1	12	100	0	50	16	0	60	24	1.36
1222019--1222086	35	1.9	35	100	0	136	29	29	14	26	1.95
1222512--1222555	21	2.1	21	86	0	61	29	0	18	52	1.46
1223333--1223397	26	2.6	25	79	13	62	50	6	1	41	1.36
1226173--1226226	19	3.0	18	76	20	51	40	0	12	46	1.42
1226215--1226668	26	18.7	26	75	19	333	43	2	10	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1226209--1226800	11	49.2	11	67	20	132	42	2	10	44	1.51
1226426--1226784	116	3.1	114	85	10	457	42	1	10	45	1.48
1226654--1226731	23	4.0	20	73	20	67	41	1	11	46	1.48
1226719--1226800	14	6.4	14	75	16	61	42	1	6	50	1.35
1226753--1226826	38	1.9	38	83	5	96	45	4	5	44	1.45
1227006--1227038	17	1.9	17	93	0	57	36	6	12	45	1.66
1226958--1227031	24	3.1	24	70	22	66	37	4	9	48	1.55
1229168--1229197	12	2.4	13	94	5	53	60	6	0	33	1.23
1229507--1229547	22	1.9	22	90	5	66	53	21	0	24	1.46
1229654--1229703	20	2.5	20	93	3	84	2	36	0	62	1.07
1229708--1229753	23	2.0	23	91	0	74	13	34	4	47	1.62
1229766--1229818	25	2.1	26	96	3	99	26	33	11	28	1.91
1229999--1230105	29	3.7	29	93	2	171	23	31	29	14	1.95
1230127--1230152	13	2.0	13	100	0	52	15	38	30	15	1.88
1230174--1230216	12	3.7	12	93	6	79	16	39	16	27	1.90
1230903--1230943	13	3.1	14	86	10	59	46	29	24	0	1.53
1232032--1232250	114	1.9	113	85	2	305	37	9	10	42	1.71
1236043--1236093	22	2.3	22	96	0	93	21	43	13	21	1.87
1236207--1236252	24	1.9	24	100	0	92	26	4	13	56	1.55
1236538--1236588	20	2.5	20	93	0	84	11	13	23	50	1.74
1236552--1236595	20	2.2	20	91	0	70	11	13	20	54	1.69
1238570--1238608	19	2.0	20	85	5	53	12	12	20	53	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1238615--1238681	20	3.4	19	81	8	71	20	20	20	37	1.95
1238668--1238712	20	2.2	20	92	0	72	17	13	20	48	1.80
1239165--1239283	21	5.6	22	69	8	86	22	35	17	24	1.95
1239172--1239283	42	2.7	42	85	0	143	22	35	18	23	1.96
1240823--1240886	20	3.2	20	88	0	101	45	21	18	14	1.85
1240925--1241035	20	5.8	20	76	12	126	26	18	22	33	1.96
1240876--1241027	54	2.8	54	86	3	191	23	17	23	34	1.96
1240927--1241035	34	3.0	34	65	23	87	26	17	22	33	1.96
1241206--1241240	18	1.9	18	94	0	61	20	2	22	54	1.58
1243069--1243193	31	4.0	31	92	2	198	36	23	20	20	1.95
1243995--1244038	21	2.1	21	91	0	70	15	22	27	34	1.95
1247177--1247301	31	4.0	31	91	2	189	37	23	19	20	1.94
1248108--1248152	21	2.1	21	87	0	63	15	24	28	31	1.96
1249241--1249285	21	2.1	21	87	0	63	31	28	24	15	1.96
1249866--1249900	18	1.9	18	88	11	54	54	5	17	22	1.64
1249957--1250000	22	2.0	22	86	4	63	45	0	22	31	1.53
1250769--1251072	149	2.0	149	98	0	581	27	17	20	34	1.95
1251051--1251095	23	2.0	23	86	0	63	20	24	28	26	1.99
1254362--1254406	21	2.1	21	87	0	63	31	28	24	15	1.96
1254986--1255020	18	1.9	18	88	11	54	54	5	17	22	1.64
1255077--1255120	22	2.0	22	86	4	63	45	0	22	31	1.53
1255908--1256211	149	2.0	149	98	0	590	27	17	20	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1256190--1256234	23	2.0	23	86	0	63	20	24	28	26	1.99
1258160--1258186	14	1.9	14	100	0	54	7	18	29	44	1.77
1259054--1259091	17	2.2	17	95	0	67	28	5	34	31	1.80
1259253--1259344	21	4.4	21	78	8	116	18	16	23	41	1.90
1259274--1259371	41	2.4	41	92	0	169	20	16	24	38	1.92
1259444--1259489	19	2.4	19	85	3	56	21	17	30	30	1.96
1259455--1259491	19	1.9	19	94	0	65	21	16	29	32	1.95
1266531--1266618	38	2.3	38	96	0	158	32	13	22	30	1.93
1276243--1276298	21	2.7	20	83	5	58	26	30	16	26	1.96
1281401--1281464	21	3.1	20	90	4	92	28	29	15	26	1.96
1285061--1285116	27	2.1	27	100	0	112	32	3	28	35	1.74
1285376--1285442	32	2.1	33	82	2	82	29	11	28	29	1.92
1285397--1285549	78	2.0	78	92	1	254	25	10	23	40	1.86
1285424--1285700	137	2.0	137	92	0	464	26	9	21	41	1.84
1285746--1285780	17	2.1	16	89	5	52	14	20	25	40	1.90
1289288--1289325	18	2.1	19	85	14	53	31	0	15	52	1.43
1289678--1289807	59	2.2	60	85	10	185	37	3	21	37	1.69
1289701--1289793	28	3.2	28	67	19	73	43	4	18	34	1.70
1292021--1292087	30	2.2	30	100	0	134	11	17	43	26	1.84
1292891--1292952	19	3.1	19	77	15	54	77	4	4	12	1.09
1298441--1298470	13	2.3	13	94	0	51	43	23	16	16	1.87
1298475--1298520	18	2.6	18	92	0	74	45	17	17	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1306145--1306196	21	2.5	21	90	0	77	25	32	21	21	1.98
1307053--1307090	18	2.1	19	85	5	51	31	5	2	60	1.33
1307498--1307529	13	2.4	14	94	5	57	59	0	0	40	0.97
1315931--1315977	25	1.9	25	87	12	71	59	2	0	38	1.09
1321755--1321804	16	3.5	16	70	30	58	12	20	34	34	1.89
1321751--1321803	26	2.0	26	100	0	106	15	18	33	32	1.92
1324429--1324478	19	2.6	19	93	0	82	30	18	28	24	1.97
1331530--1331580	23	2.2	23	82	0	57	45	1	1	50	1.24
1331568--1331638	19	3.6	19	70	10	54	47	1	2	47	1.25
1331681--1331746	8	8.6	8	69	15	50	43	0	1	54	1.09
1331681--1331764	31	2.7	31	82	12	93	46	0	1	52	1.08
1331683--1331764	32	2.5	33	84	11	107	47	0	1	51	1.08
1331717--1331779	22	2.9	22	79	11	67	52	0	0	47	1.00
1331740--1331789	21	2.3	23	86	6	68	48	0	0	52	1.00
1331971--1332065	42	2.3	42	90	3	147	50	17	13	17	1.78
1331994--1332089	42	2.4	38	81	8	95	48	16	15	18	1.81
1333677--1333713	18	2.1	18	100	0	74	27	18	43	10	1.83
1334832--1334882	18	2.8	19	74	11	54	47	9	7	35	1.66
1334888--1334922	2	17.5	2	100	0	70	51	0	0	48	1.00
1336562--1336620	25	2.4	25	91	5	93	40	20	11	27	1.87
1338089--1338137	10	4.7	10	81	16	55	63	22	0	14	1.30
1338105--1338137	10	3.4	10	95	4	59	69	18	0	12	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1339841--1339957	60	2.0	60	84	0	153	26	14	19	39	1.90
1340152--1340288	60	2.3	59	81	6	159	33	16	18	30	1.94
1342555--1342623	2	34.0	2	97	2	129	49	1	0	49	1.09
1350636--1350693	23	2.5	23	80	5	73	72	1	0	25	0.94
1351056--1351111	16	3.4	16	85	9	76	35	5	32	26	1.79
1355751--1355802	13	3.5	16	75	17	58	38	1	0	59	1.08
1355760--1355807	13	3.6	13	81	13	62	33	2	0	64	1.05
1355932--1355962	13	2.4	13	94	0	53	38	9	0	51	1.35
1361315--1362063	374	2.0	374	98	0	1464	37	13	17	31	1.89
1362966--1363083	32	3.8	32	78	11	145	33	17	17	31	1.94

Tables:   1   2   3   4   5   6   7   8   9