genome.fa.s8206.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008206.1 Hibiscus syriacus cultivar Beakdansim tig00110828_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1504526

Tables:   1   2   3   4   5   6   7   8   9   

This is table  6  of  9  ( 1041 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
891868--891921	20	2.7	20	94	0	99	24	24	27	24	2.00
891873--891921	10	4.9	10	76	0	53	24	26	26	22	2.00
894577--894608	2	16.0	2	100	0	64	50	0	0	50	1.00
897523--897580	18	3.2	17	75	20	55	56	1	10	31	1.43
897534--897588	18	3.1	16	78	17	56	58	1	7	32	1.36
898991--899074	20	4.2	21	75	15	70	41	1	1	55	1.15
899043--899080	20	1.9	20	94	0	67	34	2	0	63	1.09
899163--899240	23	3.4	23	80	5	86	57	2	2	37	1.26
899134--899214	23	4.2	19	72	24	71	56	2	0	40	1.12
899162--899218	23	2.6	22	91	8	98	56	3	0	40	1.17
899893--899936	17	2.5	19	86	13	60	31	0	0	68	0.90
899989--900070	33	2.5	33	92	4	130	36	20	14	28	1.92
900546--900586	19	2.2	19	86	8	57	24	2	0	73	0.96
900542--900594	26	2.0	27	88	3	81	22	3	0	73	0.99
904601--904859	110	2.4	108	86	2	360	34	23	17	23	1.96
905914--905980	33	2.0	33	94	0	116	43	19	8	28	1.81
905914--905995	33	2.5	32	88	7	103	40	19	12	28	1.87
906466--906508	22	2.0	21	90	4	68	23	2	0	74	0.93
908436--908902	40	11.7	40	75	8	283	25	19	15	39	1.91
908429--908902	80	5.9	80	74	7	401	25	19	15	39	1.91
908437--908896	120	3.8	119	77	6	412	25	19	15	39	1.91
908957--909136	51	3.5	51	86	0	252	41	16	10	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
908948--909131	102	1.8	102	89	0	287	41	15	10	32	1.81
909068--909213	77	1.9	77	84	5	197	41	21	8	28	1.82
909064--909308	128	1.9	128	87	3	359	40	20	8	31	1.82
909145--909263	51	2.3	51	83	0	148	39	22	5	31	1.78
909196--909408	73	2.8	76	80	5	252	39	19	8	32	1.82
909777--909803	13	2.1	13	100	0	54	7	7	14	70	1.32
909981--910180	43	4.7	44	83	4	214	33	20	18	28	1.95
914086--914297	41	5.2	41	73	10	157	31	20	18	29	1.96
918712--918761	21	2.4	21	86	0	73	42	10	20	28	1.84
922156--922188	16	2.0	17	94	5	59	36	6	21	36	1.78
928244--928284	20	2.0	20	86	9	57	36	4	0	58	1.20
929683--929726	22	1.9	24	90	9	74	50	6	9	34	1.61
931075--931172	37	2.6	37	88	0	133	42	13	14	29	1.83
931533--931573	9	4.8	9	79	8	50	19	0	4	75	0.98
931696--931725	2	15.5	2	93	6	53	50	0	0	50	1.00
931915--931972	20	2.9	21	72	25	54	29	6	5	58	1.46
932016--932083	29	2.3	30	80	12	86	17	8	0	73	1.08
936280--936327	18	2.6	18	81	15	62	85	6	4	4	0.83
937718--938767	106	9.9	105	89	1	1492	33	23	18	24	1.96
939498--939596	37	2.7	37	87	3	130	42	12	16	29	1.84
940260--940321	19	3.0	21	71	26	60	33	4	3	58	1.36
940273--940321	19	2.4	22	80	16	61	32	4	2	61	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
940109--940499	193	2.0	190	91	6	637	32	4	5	56	1.44
940109--940499	194	2.0	191	91	6	639	32	4	5	56	1.44
940625--940682	13	4.8	12	72	20	50	10	10	0	79	0.94
945472--945537	34	1.9	35	87	9	100	48	4	3	43	1.38
947460--947879	148	2.9	144	84	4	576	28	11	22	37	1.89
950667--950712	3	15.0	3	86	4	65	4	32	0	63	1.14
956262--956320	23	2.6	23	94	0	100	25	8	13	52	1.68
960001--960058	17	3.2	17	78	21	64	27	0	3	68	1.05
961792--961830	16	2.4	16	91	0	60	20	28	12	38	1.89
962319--962359	21	2.0	21	85	0	55	9	2	31	56	1.45
962464--962514	10	4.8	10	77	20	50	56	1	0	41	1.10
962461--962530	23	3.0	22	78	16	70	57	1	0	41	1.08
962823--962887	14	4.6	14	74	14	62	24	0	23	52	1.48
962829--962887	21	2.8	21	81	0	64	25	0	20	54	1.45
962914--962956	13	3.3	13	93	0	77	39	0	9	51	1.34
962937--962987	20	2.4	21	74	9	59	41	7	5	45	1.57
962985--963011	13	2.1	13	100	0	54	55	0	0	44	0.99
962985--963027	13	3.1	14	86	6	52	55	0	2	41	1.12
962432--963344	498	1.8	504	93	2	1577	37	9	11	41	1.73
963325--963399	7	10.7	7	85	0	78	17	4	36	42	1.68
963444--963483	19	2.1	19	100	0	80	35	5	7	52	1.51
963506--963548	15	2.8	15	92	3	68	41	2	6	48	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
963493--963532	19	2.1	19	90	0	62	42	2	7	47	1.45
964029--964069	19	2.1	20	90	4	66	43	2	2	51	1.28
964036--964080	20	2.3	19	88	3	63	37	4	6	51	1.49
964299--964351	23	2.3	21	79	17	61	41	3	1	52	1.30
964675--964795	64	1.9	65	91	1	199	31	25	18	24	1.97
969277--969408	60	2.2	59	81	9	144	34	20	4	40	1.73
987171--987785	127	4.9	127	92	0	1000	22	22	20	34	1.96
987178--987785	253	2.4	254	93	1	1033	22	22	19	35	1.96
988789--988841	21	2.5	21	73	11	54	30	26	26	16	1.97
989667--989696	14	2.1	14	93	0	51	60	0	0	40	0.97
990444--990489	17	2.8	16	83	9	56	63	2	0	34	1.07
990439--990497	17	3.6	16	72	21	50	64	1	0	33	1.04
990625--990709	14	6.3	14	66	16	54	56	0	0	43	0.99
990677--990736	24	2.5	22	80	17	66	58	0	0	41	0.98
991880--991972	21	4.5	21	75	4	91	40	18	24	16	1.90
991880--991972	41	2.3	41	98	0	177	40	18	24	16	1.90
991899--992033	41	3.3	41	83	4	139	39	20	20	19	1.93
991961--992055	20	4.7	20	80	2	91	34	24	16	24	1.95
992243--992286	22	2.0	22	95	0	79	20	45	15	18	1.85
995695--995793	33	3.0	33	87	1	135	40	26	22	11	1.87
995670--995873	19	11.1	19	77	15	196	44	21	21	12	1.85
996448--996541	20	4.7	20	80	2	89	24	17	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
996530--996622	20	4.5	21	72	4	82	18	25	16	39	1.91
996469--996603	41	3.3	41	80	7	123	20	21	19	38	1.94
996533--996622	41	2.2	41	93	0	153	18	25	15	40	1.90
997989--998074	36	2.4	36	90	0	136	17	16	20	45	1.86
998141--998182	17	2.5	17	80	7	50	45	14	0	40	1.45
1002680--1002720	12	3.4	12	90	6	57	21	0	4	73	1.02
1002709--1002769	23	2.5	25	78	7	72	32	3	4	59	1.35
1003170--1003211	20	2.0	22	90	9	70	35	23	0	40	1.55
1003200--1003255	2	29.0	2	89	7	89	46	0	1	51	1.11
1003245--1003578	167	2.0	167	100	0	668	23	16	16	43	1.87
1005192--1005908	114	6.3	114	90	2	1088	31	12	13	42	1.81
1005989--1006233	74	3.4	74	90	2	388	33	12	15	39	1.84
1006295--1006610	135	2.3	135	91	2	503	33	11	12	42	1.79
1006586--1006633	23	2.1	23	92	0	78	33	18	12	35	1.89
1006452--1007136	158	4.3	158	94	0	1151	33	12	12	41	1.81
1006742--1006791	23	2.2	23	92	0	82	32	18	12	38	1.87
1006900--1006949	23	2.2	23	92	0	82	32	18	12	38	1.87
1007058--1007107	23	2.2	23	88	0	73	34	18	10	38	1.84
1007144--1007188	23	2.0	23	86	0	63	37	15	8	37	1.79
1007040--1007212	87	2.0	87	89	2	267	34	12	10	43	1.76
1010325--1010354	10	3.0	10	95	0	51	33	16	0	50	1.46
1016791--1017067	53	5.2	53	89	2	419	27	28	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1016783--1017067	108	2.6	108	91	2	439	28	28	13	29	1.94
1017069--1017678	51	11.8	51	85	6	741	22	24	18	33	1.97
1017073--1017678	258	2.4	257	91	1	1000	22	24	18	33	1.97
1018060--1018257	36	5.5	36	86	2	238	20	19	23	36	1.95
1030699--1030809	49	2.3	50	83	10	140	20	21	18	39	1.92
1032121--1032156	16	2.2	16	90	9	56	52	11	5	30	1.59
1034249--1034304	29	1.9	30	85	7	80	50	3	1	44	1.29
1034493--1034650	21	7.8	20	72	7	86	38	25	17	18	1.92
1034617--1034864	20	12.5	20	85	3	250	37	25	18	19	1.94
1035542--1035588	24	2.0	24	87	8	69	25	14	21	38	1.92

Tables:   1   2   3   4   5   6   7   8   9