genome.fa.s8208.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008208.1 Hibiscus syriacus cultivar Beakdansim tig00110830_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2533913

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 919 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362080--362130	9	5.6	9	82	17	61	11	23	0	64	1.26
362084--362142	26	2.2	28	85	11	79	13	22	0	64	1.28
362080--362132	13	3.9	13	92	7	88	11	22	0	66	1.24
362092--362151	26	2.3	27	75	13	63	16	21	0	61	1.34
363845--363900	23	2.4	23	90	0	85	35	14	21	28	1.92
367647--367671	2	12.5	2	100	0	50	52	0	0	48	1.00
372387--372462	35	2.2	35	95	0	134	39	6	14	39	1.72
381077--381124	20	2.4	20	93	6	80	14	14	27	43	1.84
382925--382985	25	2.4	25	84	10	72	14	13	13	59	1.63
387646--387684	14	2.9	13	85	7	60	33	0	41	25	1.56
387650--387698	13	3.6	14	86	5	57	40	0	34	24	1.55
387646--387698	27	2.0	27	88	0	79	39	0	35	24	1.56
387663--387704	14	3.1	14	82	6	50	47	0	28	23	1.52
388051--388089	19	2.1	19	85	0	51	43	5	12	38	1.65
388256--388310	22	2.5	22	84	0	83	30	21	25	21	1.98
391170--391202	17	1.9	17	93	0	57	36	0	33	30	1.58
391242--391289	16	2.9	16	81	6	51	64	0	18	16	1.29
391904--391943	14	2.9	14	92	3	64	40	0	37	22	1.54
395346--395387	13	3.2	13	77	9	50	78	0	19	2	0.86
403099--403131	11	2.8	12	86	9	50	27	0	39	33	1.57
406789--406834	25	1.9	24	86	8	67	8	17	4	69	1.31
410044--410072	15	1.9	15	100	0	58	17	20	27	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410754--410797	20	2.2	20	88	8	63	0	9	6	84	0.79
410964--411014	19	2.5	20	84	12	61	62	0	19	17	1.32
418308--418343	16	2.3	15	90	4	54	33	2	5	58	1.36
418342--418370	14	2.1	14	100	0	58	58	13	0	27	1.36
420172--420210	19	2.0	21	90	10	64	7	33	0	58	1.26
422886--423061	82	2.1	82	94	1	307	28	3	34	34	1.74
424654--424706	17	3.1	17	83	0	61	37	11	9	41	1.73
426110--426160	16	3.4	16	77	17	56	78	3	9	7	1.07
428554--428826	59	4.6	59	89	0	420	30	21	11	36	1.89
429115--429266	53	2.9	52	86	4	189	32	15	17	34	1.92
434999--435036	18	2.0	20	85	10	53	36	18	10	34	1.85
435036--435364	59	5.6	59	90	0	489	31	22	10	35	1.88
435606--435678	19	3.9	19	91	3	114	32	20	17	28	1.96
435661--435808	53	2.8	53	82	6	183	31	16	16	35	1.91
436697--436774	17	4.6	17	77	3	59	35	12	6	44	1.68
438193--438275	40	2.1	38	84	8	105	62	3	18	15	1.46
440098--440152	17	3.2	17	75	14	58	43	5	14	36	1.69
447373--447401	8	3.6	8	100	0	58	20	10	0	68	1.18
447364--447401	16	2.4	16	83	16	53	21	10	0	68	1.19
449432--449480	20	2.4	21	80	10	57	18	24	0	57	1.41
449784--449912	50	2.6	50	88	0	177	41	27	12	18	1.86
450726--450824	50	2.0	50	88	4	146	36	23	19	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458544--458584	22	1.9	21	90	5	64	31	0	34	34	1.58
463684--463742	25	2.4	24	83	8	75	8	13	3	74	1.17
467868--467909	18	2.3	19	95	4	77	59	0	9	30	1.29
472499--472530	16	2.0	16	93	0	55	71	0	15	12	1.14
475673--475715	21	2.0	21	95	0	77	58	6	23	11	1.57
475677--475723	21	2.2	21	81	7	60	57	8	19	14	1.63
485512--485594	29	2.8	30	83	3	114	20	26	16	36	1.94
485966--486004	20	2.0	20	85	10	53	38	12	20	28	1.89
493431--493484	21	2.6	21	80	14	58	12	7	5	74	1.21
501578--501621	23	2.0	23	86	4	63	59	18	13	9	1.60
501586--501635	24	2.1	23	81	3	55	64	14	14	8	1.50
503943--503983	16	2.6	17	81	14	52	17	31	4	46	1.69
504245--504288	23	2.0	23	86	4	63	6	13	15	63	1.49
528521--528619	47	2.1	47	88	1	155	52	3	23	21	1.60
528543--528612	15	4.5	15	72	13	61	51	1	24	22	1.56
529435--529510	29	2.6	30	77	10	84	35	17	25	22	1.95
542842--543233	54	7.2	54	83	1	460	35	19	16	28	1.94
542842--543233	163	2.4	164	84	2	504	35	19	16	28	1.94
544337--544412	25	3.2	25	63	24	65	23	22	14	39	1.91
544304--544586	45	6.1	45	86	6	338	24	20	15	38	1.92
544389--544465	26	3.2	26	60	30	62	22	18	16	42	1.89
547586--548269	298	2.3	293	81	6	729	29	21	13	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
551626--551709	41	2.0	41	93	0	141	30	17	5	45	1.73
552353--554668	289	7.9	285	74	9	1277	31	20	14	33	1.92
551667--554645	289	10.1	291	73	9	978	31	21	13	33	1.92
554786--556164	287	4.7	289	77	9	967	30	22	14	33	1.93
562148--565895	296	12.9	289	71	10	1671	30	21	14	33	1.93
564484--565117	291	2.2	289	76	9	612	30	21	13	33	1.93
570288--570994	294	2.4	293	80	5	769	31	20	13	34	1.91
570288--571047	297	2.6	292	78	6	753	31	21	12	34	1.91
571285--571329	21	2.1	21	87	0	63	13	35	24	26	1.92
580891--582620	293	5.9	294	74	9	971	31	22	13	32	1.93
582735--585580	289	9.8	286	71	10	852	32	22	13	32	1.92
584318--584358	16	2.6	16	88	0	55	12	41	12	34	1.80
590612--591206	288	2.1	285	81	9	665	29	22	14	32	1.94
591939--596704	588	8.2	583	71	12	2652	31	21	13	34	1.92
591992--595082	296	10.6	294	71	11	1245	31	21	13	34	1.91
598301--599846	291	5.4	283	72	12	842	30	21	13	35	1.91
601221--601757	294	1.8	293	81	3	659	30	21	14	33	1.93
602646--603287	296	2.2	301	80	6	707	33	21	12	31	1.92
603816--606596	291	9.5	289	72	10	1329	30	21	13	34	1.91
603843--605970	290	7.2	294	71	10	963	30	21	13	34	1.91
603833--606348	591	4.3	575	76	8	2101	30	21	13	34	1.91
607842--608388	294	1.9	291	82	5	697	33	21	14	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
609720--611840	706	3.0	706	97	0	3974	32	21	13	32	1.92
612244--612480	125	1.9	118	81	10	282	39	24	12	24	1.89
613216--613785	290	2.0	290	78	6	611	31	22	13	31	1.93
615771--616508	81	9.1	81	87	1	1023	30	21	10	36	1.88
616826--616971	55	2.7	55	89	1	204	26	23	18	32	1.97
621211--622030	81	10.2	81	88	2	1195	32	21	10	35	1.87
621215--622030	242	3.4	242	88	3	1241	32	21	10	35	1.87
622340--622505	55	3.0	55	85	2	219	28	18	18	33	1.95
629866--630864	295	3.4	294	77	4	840	30	21	13	34	1.91
632813--633019	114	1.8	114	81	6	258	24	26	19	29	1.98
632996--634208	293	4.2	292	74	9	703	30	22	14	32	1.94
635000--635631	289	2.2	286	81	4	711	33	21	13	30	1.92
636781--637616	293	2.8	289	78	7	833	31	21	14	32	1.93
638899--640250	295	4.6	291	75	8	1083	31	22	12	33	1.92
640942--641211	45	6.0	45	95	1	445	31	22	5	40	1.76
643428--644148	293	2.5	291	80	7	755	32	20	12	34	1.90
643601--644267	293	2.3	292	79	6	715	35	20	12	31	1.90
644297--646426	580	3.6	582	75	11	1458	33	20	13	33	1.91
644286--646430	284	7.3	292	73	11	1280	33	20	13	33	1.91
644308--646054	291	6.0	290	74	11	1156	32	21	13	33	1.91
644286--646431	885	2.4	873	84	5	2651	32	20	13	32	1.91
646590--647483	286	3.1	291	75	12	773	33	20	13	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648350--648450	43	2.3	43	94	0	175	42	6	17	32	1.76
651603--652573	293	3.3	289	77	6	744	31	22	12	33	1.92
652903--653448	293	1.9	292	81	5	674	30	21	16	31	1.95
655862--661631	291	19.9	288	72	11	2727	32	22	12	32	1.92
656940--658730	580	3.1	575	76	8	1320	33	22	12	31	1.91
658775--660178	294	4.8	290	73	10	967	32	22	12	32	1.91
671033--671077	21	2.1	22	91	4	74	37	4	13	44	1.64
671465--671597	45	3.0	44	86	3	178	39	9	23	27	1.86
677171--677263	46	2.0	46	100	0	186	36	6	21	35	1.79
677619--677663	21	2.1	22	87	4	65	37	4	11	46	1.60

Tables:   1   2   3   4   5   6   7   8