genome.fa.s8208.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008208.1 Hibiscus syriacus cultivar Beakdansim tig00110830_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2533913

Tables:   1   2   3   4   5   6   7   8   

This is table  6  of  8  ( 919 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1626747--1626785	18	2.0	20	90	9	64	66	0	10	23	1.22
1627194--1627244	19	2.6	20	84	3	68	43	5	13	37	1.69
1638991--1639042	19	2.6	21	90	6	81	46	7	13	32	1.72
1641940--1641989	17	2.9	17	93	3	82	64	0	26	10	1.25
1642199--1642251	11	4.6	11	80	17	54	0	22	0	77	0.77
1642209--1642239	16	1.9	16	100	0	62	0	22	0	77	0.77
1642965--1643016	19	2.6	21	90	6	81	46	7	13	32	1.72
1653918--1653943	5	5.2	5	100	0	52	80	0	19	0	0.71
1660407--1660445	13	3.0	13	82	14	53	0	25	0	74	0.82
1660420--1660461	8	5.2	8	83	11	59	0	23	2	73	0.94
1661968--1662007	2	20.5	2	94	5	73	50	0	0	50	1.00
1664918--1664986	20	3.6	19	75	13	70	4	13	2	79	0.99
1664936--1664997	6	10.5	6	74	10	56	1	16	3	79	0.95
1664918--1665004	36	2.4	36	84	5	113	3	13	4	78	1.04
1664918--1665003	28	3.1	28	77	11	88	3	13	3	79	1.00
1664937--1665005	17	3.9	19	77	20	71	1	15	4	78	0.98
1674678--1674728	5	9.6	5	78	18	50	74	3	19	1	1.07
1675930--1675961	13	2.3	15	89	10	50	0	12	6	81	0.87
1676167--1676208	20	2.0	21	90	4	68	57	0	26	16	1.40
1699772--1699800	15	2.0	15	93	6	51	0	20	3	75	0.94
1700739--1700855	36	3.3	35	87	9	159	29	3	36	30	1.74
1700770--1700855	13	7.2	12	72	22	58	29	3	37	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1700755--1700856	36	2.9	36	94	1	170	26	4	36	32	1.78
1706432--1706496	33	2.0	32	82	8	78	33	1	32	32	1.67
1706485--1706575	36	2.6	36	92	1	148	28	4	36	30	1.77
1711203--1711242	3	13.7	3	94	5	73	65	0	0	35	0.93
1711446--1711774	43	7.7	41	73	12	184	23	18	31	26	1.97
1711450--1711771	130	2.5	130	92	2	531	23	18	31	26	1.98
1711820--1711881	28	2.2	28	88	5	90	51	12	11	24	1.72
1712890--1712980	28	3.2	27	82	13	112	48	14	8	28	1.73
1712693--1713010	120	2.6	119	81	6	336	43	12	14	30	1.82
1713204--1713326	36	3.5	35	79	5	133	37	10	21	30	1.87
1713278--1713510	105	2.3	101	85	8	292	37	11	20	30	1.88
1713536--1713597	21	3.1	21	62	17	51	35	12	20	30	1.91
1713530--1713638	38	2.9	36	82	6	119	34	12	19	33	1.90
1713963--1714001	4	10.2	4	89	10	64	25	0	25	48	1.51
1717567--1717628	32	1.9	32	86	0	88	58	11	14	16	1.64
1721178--1721226	3	16.7	3	95	4	91	65	0	0	34	0.93
1722489--1722573	11	7.2	11	72	22	66	31	36	3	28	1.74
1722486--1722587	36	2.9	36	95	1	179	30	35	4	29	1.79
1725761--1725818	29	2.0	29	100	0	116	31	27	3	37	1.73
1725770--1725819	15	3.4	15	72	5	57	28	26	4	42	1.73
1726643--1726727	11	7.2	11	72	22	66	31	36	3	28	1.74
1726640--1726736	36	2.7	36	96	1	178	29	36	5	28	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1728754--1728808	24	2.3	25	81	6	60	29	21	16	32	1.95
1733449--1733499	19	2.6	20	93	3	86	43	5	13	37	1.69
1738973--1739023	19	2.6	20	90	3	77	43	7	13	35	1.73
1740237--1740282	24	1.9	24	81	0	56	34	43	2	19	1.63
1743962--1744065	25	4.4	24	68	21	67	27	35	4	31	1.78
1743960--1744100	36	3.9	36	90	0	219	28	36	4	31	1.76
1743960--1744098	72	1.9	72	94	0	242	28	35	4	31	1.77
1746929--1747013	11	7.2	11	72	22	66	31	36	3	28	1.74
1746926--1747027	36	2.9	36	94	1	170	32	36	4	26	1.78
1746927--1747043	36	3.4	34	85	11	130	30	36	3	29	1.74
1746927--1747066	36	4.1	33	84	9	88	30	36	2	30	1.72
1750295--1750399	25	4.4	24	68	21	69	27	35	4	32	1.78
1750296--1750434	36	3.9	36	90	0	215	28	35	4	30	1.77
1750296--1750432	72	1.9	72	93	0	238	28	35	4	31	1.77
1751887--1751936	19	2.6	20	90	6	77	36	12	6	46	1.66
1757148--1757176	15	2.0	15	93	6	51	0	20	3	75	0.94
1761855--1761934	35	2.2	37	91	4	128	31	37	3	27	1.74
1765484--1765534	20	2.6	20	90	3	77	31	15	5	47	1.70
1771592--1771648	8	6.9	8	90	6	87	77	1	21	0	0.86
1771592--1771655	5	12.8	5	78	18	55	78	1	20	0	0.84
1771591--1771658	16	4.4	16	70	27	58	77	1	20	0	0.84
1771590--1771662	21	3.5	20	78	17	78	76	1	21	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1784693--1784775	29	2.8	29	80	10	105	32	16	27	22	1.96
1785363--1785393	12	2.6	12	89	0	53	12	12	0	74	1.08
1791498--1791556	25	2.5	23	76	12	57	1	20	3	74	1.05
1791504--1791557	22	2.5	21	77	11	56	1	18	3	75	1.03
1796336--1796361	13	2.0	13	100	0	52	7	23	46	23	1.78
1799036--1799074	15	2.6	15	95	0	69	7	25	5	61	1.44
1799710--1799758	24	2.0	24	84	0	62	8	12	18	61	1.55
1802971--1803128	74	2.1	72	81	9	176	21	17	20	40	1.91
1804118--1804156	19	2.1	19	100	0	78	15	25	5	53	1.62
1811587--1811615	12	2.5	12	94	5	51	37	0	34	27	1.57
1814463--1814510	8	5.9	8	88	11	71	77	2	20	0	0.88
1814463--1814517	5	10.8	5	78	21	53	78	1	20	0	0.85
1814462--1814520	16	3.7	15	82	10	64	77	1	20	0	0.85
1826899--1827120	110	2.0	112	98	1	430	37	21	14	26	1.92
1829528--1829706	99	1.8	97	86	4	261	21	22	16	38	1.93
1831773--1831812	20	1.9	22	90	10	66	25	20	10	45	1.81
1832584--1832672	29	3.0	29	75	14	92	35	15	26	21	1.94
1832584--1832675	30	3.1	30	74	3	96	36	16	26	20	1.93
1835254--1835299	23	2.0	23	83	8	58	36	6	8	47	1.60
1836874--1836934	22	2.9	21	77	15	65	75	3	19	1	1.03
1839769--1839814	23	2.0	23	83	8	58	36	6	8	47	1.60
1841664--1841719	25	2.3	25	84	6	71	58	14	14	12	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1848480--1848528	22	2.2	22	96	0	89	32	22	24	20	1.98
1852070--1852148	30	2.6	30	87	0	104	29	31	12	26	1.93
1868920--1868968	25	1.9	24	88	12	71	79	4	16	0	0.88
1875742--1875821	35	2.3	35	93	0	133	32	2	37	27	1.70
1876983--1877027	22	2.1	21	84	12	56	42	6	15	35	1.73
1877315--1877383	33	2.1	33	83	5	86	31	1	36	30	1.67
1877369--1877454	13	7.2	12	72	22	58	29	3	37	30	1.74
1877354--1877455	36	2.9	36	94	1	170	26	4	36	32	1.78
1882388--1882436	23	2.1	24	81	11	57	63	0	18	18	1.32
1882596--1882629	14	2.4	15	90	9	54	2	14	8	73	1.19
1883038--1883106	33	2.1	33	83	5	86	31	0	37	30	1.58
1883092--1883156	13	5.4	12	75	21	57	29	3	35	32	1.73
1883090--1883178	36	2.5	36	92	1	144	29	3	35	31	1.74
1887404--1887449	21	2.1	21	84	4	56	78	6	15	0	0.95
1887412--1887459	21	2.4	19	82	6	60	79	4	16	0	0.89
1887409--1887450	14	2.9	14	82	6	57	80	4	14	0	0.86
1887418--1887458	11	3.8	11	78	15	50	80	2	17	0	0.82
1891411--1891516	35	3.0	35	78	1	122	27	35	3	33	1.75
1892222--1892300	30	2.6	30	81	0	86	29	27	11	31	1.91
1895252--1895308	19	2.8	20	80	15	64	77	5	15	1	1.03
1895436--1896057	309	2.0	311	94	1	1088	29	18	15	37	1.91
1910023--1910082	19	3.2	19	88	6	79	75	3	18	3	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1922581--1922623	23	1.9	21	81	13	50	34	16	18	30	1.93
1923836--1923869	5	6.8	5	100	0	68	0	17	0	82	0.67
1923856--1923941	27	3.4	26	84	13	117	9	13	15	61	1.56
1934574--1934632	24	2.4	25	85	2	84	11	16	15	55	1.68
1934595--1934645	24	2.2	24	82	6	61	11	13	11	62	1.54
1937797--1937825	14	2.0	15	93	6	51	79	0	20	0	0.74
1944500--1944539	19	2.0	20	90	4	64	65	0	15	20	1.28
1944606--1944682	40	2.1	37	85	11	104	18	12	32	36	1.89
1948376--1948425	18	2.7	18	82	17	59	4	16	4	76	1.10
1948379--1948425	19	2.5	19	90	10	71	4	17	4	74	1.14

Tables:   1   2   3   4   5   6   7   8