genome.fa.s8209.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008209.1 Hibiscus syriacus cultivar Beakdansim tig00110831_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6561538

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  10  of  30  ( 3569 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2494155--2494194	20	2.0	21	85	5	55	72	7	10	10	1.28
2501515--2501882	109	3.4	109	84	3	433	35	21	17	25	1.95
2503561--2503605	14	3.1	15	83	6	56	31	4	0	64	1.13
2503562--2503603	22	2.0	22	85	4	59	30	4	0	64	1.14
2503709--2503835	4	30.2	4	73	19	66	21	5	3	70	1.22
2503786--2503866	41	2.0	41	85	7	110	16	4	6	72	1.22
2503949--2503975	14	1.9	14	100	0	54	7	18	0	74	1.05
2518508--2518694	8	22.6	8	69	27	74	72	0	16	10	1.11
2518508--2518701	14	13.4	14	71	23	86	73	0	16	10	1.10
2518516--2518628	26	4.4	28	71	22	86	73	0	15	11	1.10
2518516--2518628	17	6.6	18	68	26	68	73	0	15	11	1.10
2518490--2518592	33	3.1	33	78	13	97	74	0	13	11	1.07
2518489--2518734	58	4.1	57	74	20	177	72	0	15	11	1.11
2518539--2518701	49	3.3	48	76	17	149	73	0	15	11	1.10
2518575--2518703	43	3.1	39	74	23	97	72	0	16	10	1.11
2518646--2518672	11	2.5	11	100	0	54	70	0	22	7	1.12
2518556--2518729	51	3.4	51	75	12	130	72	0	16	10	1.10
2518540--2518700	7	23.9	7	66	26	50	72	0	16	11	1.11
2518510--2518734	127	1.8	120	81	18	273	72	0	16	10	1.11
2520021--2520131	37	3.0	36	88	5	143	36	18	21	23	1.94
2520154--2520617	110	4.3	109	80	9	468	29	17	24	29	1.97
2520154--2520617	165	2.8	163	85	8	540	29	17	24	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2520198--2520612	55	7.6	55	83	9	451	27	17	24	29	1.97
2530589--2530655	22	3.0	21	76	8	62	37	17	14	29	1.91
2531009--2531064	21	2.7	21	88	0	76	25	19	14	41	1.89
2545746--2545814	9	8.1	9	83	13	60	36	0	0	63	0.94
2545760--2545814	3	18.7	3	81	10	69	34	0	0	65	0.93
2546427--2546465	20	2.0	20	100	0	78	71	0	25	2	0.98
2547084--2547133	13	3.5	13	75	19	55	28	20	2	50	1.59
2547082--2547142	30	2.0	30	100	0	122	26	19	3	50	1.63
2559375--2559410	8	4.2	8	86	13	54	77	0	11	11	0.99
2559374--2559406	10	3.5	10	88	12	52	81	0	9	9	0.87
2559374--2559410	18	2.1	18	100	0	74	78	0	10	10	0.97
2560262--2560754	136	3.6	136	95	0	878	35	18	22	23	1.96
2560673--2561023	91	3.9	91	91	1	535	39	15	19	24	1.91
2560960--2561022	20	3.3	19	70	17	58	44	11	20	23	1.83
2561155--2561199	3	15.0	3	85	0	63	40	0	0	60	0.97
2561807--2561847	20	2.0	21	95	4	75	68	0	31	0	0.90
2563965--2564040	38	2.0	38	100	0	152	34	36	15	13	1.87
2564564--2564599	15	2.4	15	100	0	72	52	5	5	36	1.48
2565314--2565367	18	3.1	18	73	13	58	27	0	5	66	1.13
2565327--2565370	14	3.1	14	78	18	54	27	0	4	68	1.09
2565328--2565378	16	3.4	15	74	17	52	29	0	5	64	1.17
2566277--2566505	117	2.0	117	84	3	300	57	4	7	30	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2567139--2567191	24	2.2	25	80	16	67	37	18	1	41	1.62
2569491--2569529	14	2.8	14	96	0	69	53	7	20	17	1.68
2569800--2569849	25	2.0	25	96	0	91	24	10	20	46	1.81
2569823--2569974	77	2.0	77	100	0	304	37	13	19	29	1.90
2571042--2571079	20	1.9	20	94	0	67	57	2	5	34	1.35
2571234--2571290	27	2.1	28	93	3	98	31	21	5	42	1.75
2574092--2574140	13	3.8	13	88	0	71	30	18	16	34	1.93
2574118--2574282	85	1.9	85	81	7	201	31	17	18	32	1.94
2586810--2586870	23	2.9	21	85	7	70	21	36	26	16	1.94
2586853--2586890	20	1.9	20	88	0	58	26	36	26	10	1.89
2594534--2594706	46	3.8	46	90	0	267	40	6	20	32	1.79
2597659--2597694	16	2.3	16	95	4	65	66	0	13	19	1.24
2623095--2623670	45	12.8	45	77	5	486	26	16	15	41	1.88
2623096--2623655	179	3.1	179	83	4	641	25	16	16	41	1.88
2626195--2626243	12	4.2	12	80	10	50	8	14	8	69	1.36
2629890--2629919	11	2.7	11	89	0	51	60	16	0	23	1.36
2636738--2636801	24	2.8	23	77	13	62	14	28	18	39	1.90
2638598--2638637	16	2.4	17	87	4	55	47	2	2	47	1.29
2639282--2639770	135	3.6	134	84	4	619	32	19	19	27	1.97
2639531--2639637	54	2.0	54	83	3	135	37	20	16	25	1.93
2639685--2639823	54	2.6	52	84	5	147	30	22	17	30	1.96
2639704--2639824	54	2.2	53	88	2	170	29	23	15	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2646027--2646133	54	2.0	54	81	7	128	33	19	17	28	1.95
2645912--2646376	135	3.5	134	85	2	601	33	18	20	28	1.96
2646161--2646264	53	1.9	54	86	1	147	37	21	14	26	1.92
2645912--2646402	269	1.8	270	82	2	628	32	19	19	28	1.96
2652457--2652613	78	2.0	78	100	0	314	36	12	17	33	1.88
2652860--2653006	43	3.4	43	77	2	118	23	14	24	37	1.92
2653120--2653216	44	2.2	44	92	0	158	27	16	22	32	1.96
2653541--2653611	21	3.4	20	76	7	70	5	23	19	50	1.69
2653541--2653623	42	2.0	42	85	4	114	4	25	20	49	1.68
2653554--2653623	21	3.3	21	85	0	95	2	25	21	50	1.63
2653554--2653634	21	3.9	21	83	3	65	3	25	19	50	1.64
2653627--2653678	21	2.5	21	80	0	68	3	34	17	44	1.67
2664905--2664938	12	2.8	12	100	0	68	8	26	0	64	1.22
2666304--2666355	23	2.3	23	96	0	95	21	21	7	50	1.73
2666951--2667091	41	3.4	41	83	2	149	32	14	14	38	1.87
2667117--2667207	42	2.1	43	89	2	139	28	19	20	30	1.97
2668459--2668650	41	4.7	41	86	3	262	31	16	16	35	1.92
2668459--2668720	83	3.2	82	80	7	280	30	17	18	33	1.94
2670582--2670663	31	2.6	32	79	9	98	35	3	9	51	1.53
2671420--2671639	81	2.7	81	73	4	201	30	21	23	23	1.99
2673325--2673355	15	2.1	15	94	5	55	77	0	3	19	0.90
2673907--2673953	18	2.6	18	83	10	51	48	14	0	36	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2673940--2674086	29	5.1	28	77	12	138	38	8	1	51	1.42
2674088--2674484	29	13.3	29	72	8	127	54	2	6	36	1.39
2674087--2674490	31	13.6	28	73	11	166	54	2	6	36	1.39
2674306--2674490	57	3.1	58	80	7	176	56	0	5	36	1.28
2674306--2674490	88	2.1	88	81	5	212	56	0	5	36	1.28
2676617--2676650	2	16.5	2	93	6	59	47	2	0	50	1.16
2676581--2676633	25	2.1	25	83	13	65	45	16	0	37	1.48
2678964--2679044	2	43.0	2	79	11	91	41	1	0	56	1.07
2679097--2679159	22	2.7	22	87	9	72	28	1	0	69	0.97
2679102--2679160	29	2.0	28	87	12	84	28	1	0	69	0.98
2679098--2679174	27	2.9	27	81	14	81	25	2	0	71	0.99
2679093--2679173	16	5.1	17	74	15	57	27	2	0	70	1.00
2679098--2679177	29	2.9	26	77	18	74	25	2	0	72	0.97
2679155--2679179	13	1.9	13	100	0	50	12	8	0	80	0.92
2679385--2679444	26	2.3	25	80	5	66	11	6	6	75	1.19
2682501--2682635	69	2.0	69	92	0	225	38	23	13	24	1.91
2684025--2684069	17	2.8	17	90	6	67	17	17	15	48	1.81
2684203--2684289	37	2.4	37	88	1	122	25	21	12	40	1.89
2684122--2684492	102	3.6	102	88	2	469	29	19	12	38	1.89
2684305--2684530	36	6.4	36	78	11	236	26	19	13	40	1.88
2684122--2684492	203	1.8	204	82	2	478	29	19	12	38	1.89
2684325--2684576	138	1.8	138	89	0	396	26	19	13	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2684479--2684660	65	2.7	67	84	3	226	30	20	9	39	1.85
2685075--2685114	14	2.7	14	84	7	53	32	2	0	65	1.06
2685040--2685105	20	3.4	19	75	24	66	27	4	0	68	1.09
2685156--2685261	41	2.5	41	83	3	122	32	5	0	61	1.26
2685278--2685302	13	1.9	13	100	0	50	12	8	0	80	0.92
2685508--2685567	26	2.3	25	80	5	66	11	6	6	75	1.19
2688514--2688544	11	2.8	11	95	0	53	80	3	16	0	0.83
2688636--2688764	69	1.9	69	93	0	222	38	24	11	24	1.89
2690153--2690197	17	2.8	17	90	6	67	17	17	15	48	1.81
2690331--2690417	37	2.4	37	88	1	122	25	21	12	40	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30