genome.fa.s8209.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008209.1 Hibiscus syriacus cultivar Beakdansim tig00110831_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6561538

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  30  of  30  ( 3569 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6371174--6371208	18	1.9	18	88	0	52	34	2	60	2	1.26
6372177--6372210	18	1.9	17	88	5	50	64	5	0	29	1.17
6373183--6373240	20	2.9	20	100	0	116	36	10	29	24	1.88
6375973--6376043	21	3.4	21	96	0	124	32	18	22	26	1.97
6380326--6380354	2	14.5	2	100	0	58	51	0	0	48	1.00
6383781--6383821	20	2.1	20	90	4	66	68	2	0	29	1.03
6385199--6385255	27	2.1	27	100	0	114	64	7	10	17	1.46
6388931--6388973	2	21.5	2	100	0	86	51	0	0	48	1.00
6390953--6391026	19	3.7	20	81	10	71	35	6	14	43	1.72
6392301--6392342	16	2.5	17	77	14	52	73	2	21	2	1.06
6392726--6392817	4	25.0	4	67	16	56	46	0	0	53	1.00
6392726--6392817	6	16.7	6	81	13	56	46	0	0	53	1.00
6392726--6392817	10	10.0	10	65	17	56	46	0	0	53	1.00
6399680--6399723	21	2.1	21	86	0	61	9	36	15	38	1.80
6400303--6400382	31	2.6	31	91	0	124	31	2	35	31	1.71
6402405--6402465	32	1.9	31	83	3	77	27	9	8	54	1.62
6402918--6402977	16	3.8	16	91	2	77	35	3	3	58	1.31
6402925--6402977	16	3.3	16	91	0	79	32	3	3	60	1.32
6403944--6403983	13	3.1	13	96	0	71	42	27	7	22	1.80
6403944--6403994	26	2.0	26	84	0	66	43	29	5	21	1.76
6409017--6409159	74	1.9	73	91	1	232	38	5	11	44	1.64
6409490--6409548	29	2.0	30	96	3	111	42	13	10	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6412283--6413373	22	50.5	22	84	6	1257	46	10	0	42	1.38
6415202--6415248	24	2.0	24	91	0	76	23	42	0	34	1.54
6420360--6420430	24	3.0	24	95	0	124	23	42	0	33	1.55
6423300--6423330	15	2.1	15	100	0	62	19	6	22	51	1.69
6423342--6423371	15	2.0	15	100	0	60	33	20	20	26	1.97
6424112--6424569	202	2.2	205	89	2	690	37	21	18	23	1.94
6430656--6430826	21	8.2	21	77	8	156	31	22	21	23	1.98
6430676--6430826	62	2.4	61	78	12	166	31	21	22	24	1.98
6430718--6430790	20	3.6	20	77	17	87	35	17	21	24	1.95
6430673--6430812	41	3.4	41	90	4	194	32	20	22	24	1.98
6431550--6431686	42	3.3	42	90	0	220	37	23	18	21	1.94
6431547--6431692	21	6.9	20	70	16	100	36	22	19	21	1.95
6433066--6433389	66	4.9	67	81	3	336	33	22	14	29	1.94
6438078--6438111	18	1.9	17	88	5	50	29	0	5	64	1.17
6439624--6439853	118	1.9	118	91	1	372	41	13	16	28	1.86
6439839--6439866	3	9.3	3	100	0	56	67	0	32	0	0.91
6441032--6441058	2	13.5	2	100	0	54	48	0	0	51	1.00
6441459--6441523	27	2.4	28	92	2	105	20	21	24	33	1.97
6450311--6450350	20	2.0	21	95	5	73	20	17	32	30	1.95
6451134--6451167	16	2.0	18	88	11	54	55	2	0	41	1.15
6454005--6454051	21	2.4	19	80	13	51	34	10	14	40	1.81
6454964--6455005	17	2.5	17	100	0	84	19	26	4	50	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6454671--6455311	139	4.6	139	80	8	741	25	20	16	37	1.93
6455735--6455858	36	3.4	36	74	9	115	38	11	18	31	1.86
6455729--6455972	73	3.3	73	86	2	328	38	11	19	31	1.87
6455735--6455967	37	6.3	37	70	9	163	37	11	19	31	1.87
6456290--6456568	55	5.1	55	87	0	396	40	14	9	35	1.79
6456739--6457364	4	156.5	4	99	0	1234	25	0	24	50	1.50
6457954--6457986	11	2.9	11	95	4	57	15	18	18	48	1.81
6458635--6458671	13	2.9	13	88	4	58	0	21	0	78	0.75
6460074--6460114	14	3.0	14	92	3	66	48	14	19	17	1.81
6460934--6460975	21	2.0	21	86	9	59	23	23	21	30	1.99
6461539--6461624	23	3.7	23	75	12	86	27	25	25	20	1.99
6461865--6461944	31	2.5	31	90	6	117	30	26	3	40	1.73
6461970--6462018	25	2.0	24	84	15	64	42	6	12	38	1.67
6464375--6464409	2	17.5	2	93	0	61	51	0	0	48	1.00
6464570--6464621	24	2.2	24	100	0	104	57	11	5	25	1.55
6465819--6465845	2	13.5	2	100	0	54	51	0	0	48	1.00
6466158--6466246	30	3.0	30	86	1	117	34	24	20	20	1.96
6466234--6466341	31	3.5	31	76	12	121	37	18	15	28	1.92
6468028--6468181	63	2.5	62	78	5	157	22	22	20	33	1.97
6470115--6470176	23	2.7	23	85	2	72	16	19	12	51	1.76
6475853--6475921	20	3.3	22	90	10	117	8	26	28	36	1.86
6476140--6476185	18	2.7	17	72	21	51	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6486248--6486294	18	2.7	18	80	3	60	29	25	6	38	1.81
6503508--6503549	2	21.5	2	95	4	77	50	0	0	50	1.00
6503684--6503729	20	2.3	20	84	0	65	36	17	10	34	1.85
6525942--6525973	3	10.7	3	100	0	64	31	0	0	68	0.90
6525939--6525981	9	4.3	10	81	18	54	30	0	0	69	0.88
6537719--6537759	8	5.2	8	82	5	57	34	0	29	36	1.58
6537840--6538199	128	2.8	128	97	0	668	21	24	22	32	1.98
6538935--6538974	16	2.5	16	83	0	53	62	2	0	35	1.09
6538965--6539011	18	2.8	17	78	9	53	55	2	0	42	1.12
6538950--6539023	31	2.4	30	80	10	80	60	1	0	37	1.05
6538982--6539052	33	2.2	32	80	11	83	63	5	0	30	1.17
6544353--6544386	17	1.9	17	88	5	50	55	2	8	32	1.45
6552926--6552962	19	1.9	19	94	0	65	40	10	2	45	1.53
6553096--6553175	39	2.1	39	100	0	160	20	12	23	43	1.85
6555812--6555875	18	3.6	18	75	23	71	51	28	14	6	1.66
6555819--6555876	19	3.2	19	71	24	61	53	27	13	5	1.61
6559148--6559350	21	9.5	21	74	16	159	30	25	20	24	1.99
6559207--6559260	20	2.6	22	82	11	69	35	20	20	24	1.96
6559274--6559330	28	2.0	28	86	0	78	33	24	21	21	1.97
6559253--6559350	49	2.0	49	89	0	151	29	24	21	24	1.99
6559340--6559427	21	4.2	21	77	12	83	26	22	18	32	1.97
6559339--6559427	42	2.2	40	80	10	108	26	22	17	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6559560--6559733	21	8.4	21	82	11	207	22	22	26	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30

The End!