genome.fa.s8241.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008241.1 Hibiscus syriacus cultivar Beakdansim tig00110889_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1355325

Tables:   1   2   3   4   5   6   7   8   

This is table  1  of  8  ( 875 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182--252	29	2.4	29	80	4	79	38	12	14	35	1.84
2506--2557	12	3.9	12	77	22	59	30	19	17	32	1.95
2501--2540	17	2.3	18	95	4	73	25	25	22	27	2.00
9041--9083	16	2.7	16	92	0	68	32	32	13	20	1.92
9942--9979	20	2.0	20	89	5	60	39	28	0	31	1.57
10864--10920	29	1.9	30	82	3	71	36	17	5	40	1.72
14973--14998	5	5.2	5	100	0	52	0	19	57	23	1.40
17381--17441	23	2.7	23	86	0	86	21	26	24	27	1.99
17395--17449	23	2.4	23	87	0	65	21	25	21	30	1.98
19729--19797	30	2.2	30	85	15	95	34	5	17	42	1.73
19738--19797	30	2.0	30	93	6	104	33	6	16	43	1.74
19877--19932	20	2.8	20	88	2	76	25	33	17	23	1.96
19953--20012	20	2.9	21	85	5	86	23	20	28	28	1.99
20119--20158	20	1.9	22	90	10	66	37	40	10	12	1.77
20375--20442	34	2.1	34	83	5	86	32	16	26	25	1.96
21301--21348	19	2.5	20	82	3	62	52	6	10	31	1.60
22828--22900	20	3.7	20	88	0	92	20	27	20	31	1.97
23015--23054	20	1.9	22	90	10	66	37	40	10	12	1.77
25178--25210	17	2.0	17	88	5	50	57	0	0	42	0.98
25250--25341	46	2.0	46	83	10	118	34	11	10	42	1.77
28860--28956	23	4.2	23	90	0	149	37	9	18	35	1.83
29310--29361	24	2.2	24	77	16	56	53	5	0	40	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29422--29487	30	2.2	31	83	8	82	48	0	1	50	1.10
29698--29753	20	2.8	20	91	0	94	14	10	14	60	1.58
29860--29928	24	2.9	25	71	18	58	49	2	2	44	1.32
29947--30040	30	3.2	30	79	11	81	46	1	1	51	1.15
30147--30805	198	3.3	197	86	3	840	38	14	15	31	1.87
31555--31597	17	2.5	17	100	0	86	18	48	23	9	1.76
31551--31599	17	2.5	21	71	28	61	18	51	22	8	1.72
31579--31603	13	1.9	13	100	0	50	16	44	24	16	1.86
40361--40411	23	2.2	23	96	0	93	37	23	5	33	1.79
40286--40524	87	2.7	87	87	2	327	35	13	7	43	1.73
40448--40507	23	2.6	23	79	10	77	36	16	3	43	1.65
42950--42979	10	3.0	10	100	0	60	60	0	10	30	1.30
51404--51478	15	4.7	15	75	16	62	45	0	0	54	0.99
51402--51478	18	4.5	18	75	14	65	44	0	0	55	0.99
51402--51467	3	22.0	3	76	11	64	42	0	0	57	0.98
52744--52796	3	18.3	3	77	14	58	28	1	0	69	0.99
52744--52796	20	2.8	20	75	19	67	28	1	0	69	0.99
52744--52797	23	2.3	23	84	6	74	27	1	0	70	0.98
53068--53126	31	2.0	31	83	12	79	47	1	0	50	1.11
53594--53659	26	2.5	26	85	9	82	33	3	1	62	1.20
55193--55239	14	3.5	14	74	11	53	21	12	6	59	1.55
55174--55207	6	5.7	6	89	0	50	26	14	5	52	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61805--61902	49	2.1	46	90	9	153	35	17	9	37	1.82
61881--61922	22	1.9	22	95	0	75	30	11	14	42	1.81
62791--63140	73	4.9	73	90	5	570	30	18	13	37	1.90
62791--63138	139	2.4	143	88	6	524	30	18	13	37	1.90
63311--63643	76	4.4	76	98	0	621	23	19	22	34	1.97
63810--64430	5	124.0	5	84	13	811	39	0	0	60	1.01
65767--65823	26	2.1	25	81	18	62	40	7	0	52	1.28
65978--66034	29	2.0	28	83	12	73	47	1	0	50	1.11
80222--80253	17	1.9	16	93	6	55	40	0	0	59	0.97
93016--93078	24	2.7	23	87	7	99	84	0	14	1	0.71
93021--93085	24	3.0	21	85	14	80	83	0	15	1	0.73
93016--93084	15	4.5	16	75	24	69	84	0	14	1	0.70
93868--94159	94	3.1	94	95	1	507	28	15	21	34	1.94
94949--96103	113	10.0	113	84	7	1433	35	16	18	28	1.93
96326--96385	3	19.3	3	86	6	84	38	0	0	61	0.96
99364--99401	14	2.6	15	83	8	51	63	0	2	34	1.09
100638--100684	24	2.0	23	88	8	69	46	10	25	17	1.79
100638--100691	24	2.5	21	80	16	65	46	12	24	16	1.82
102301--102339	3	13.0	3	94	0	51	66	25	0	7	1.18
110233--110266	16	2.1	16	94	0	59	32	26	8	32	1.87
110700--110786	35	2.4	36	84	5	106	43	17	8	31	1.78
112394--112450	24	2.4	24	82	5	62	14	14	14	57	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112567--112658	24	3.8	24	65	15	64	13	10	17	58	1.62
114020--114089	21	3.4	21	69	9	63	27	57	4	11	1.52
114055--114176	54	2.3	54	89	2	183	30	51	8	9	1.64
115189--115234	15	3.1	15	77	20	51	47	8	0	43	1.34
124816--124929	34	3.3	34	68	12	106	56	3	6	34	1.41
124806--124938	69	1.9	70	95	1	241	51	3	7	36	1.48
124816--124955	69	2.0	69	88	2	210	55	3	6	35	1.43
130976--131085	51	2.2	49	88	6	161	58	13	11	16	1.64
136026--136059	17	2.0	17	88	0	50	52	32	0	14	1.42
138000--138039	21	1.9	21	89	0	62	10	25	40	25	1.86
138020--138082	20	2.9	21	79	9	65	15	25	34	23	1.95
141837--141876	21	1.9	21	85	10	55	35	10	2	52	1.48
144485--144549	32	2.0	32	87	0	94	43	0	27	29	1.56
148669--148721	17	3.1	18	83	8	74	5	32	0	62	1.19
149897--149949	20	2.7	20	93	0	88	45	24	16	13	1.83
149915--150182	61	4.5	61	75	11	168	38	23	19	19	1.93
149958--150182	20	11.4	20	79	9	196	38	23	19	19	1.94
149958--150180	40	5.7	40	82	9	255	38	22	19	19	1.93
149997--150140	74	1.9	75	90	4	229	40	22	18	17	1.91
149935--150188	20	12.9	19	71	14	110	37	23	19	20	1.94
150991--151037	24	2.0	24	95	0	85	21	21	21	36	1.96
153586--153737	19	8.7	19	69	21	118	43	19	23	13	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153553--153646	33	2.8	34	81	3	109	40	22	22	14	1.90
153601--153628	14	2.0	14	100	0	56	42	21	21	14	1.88
153602--153635	14	2.4	14	90	0	50	44	20	23	11	1.84
153587--153689	53	2.0	52	92	1	170	42	19	23	14	1.88
153640--153733	33	2.8	33	95	0	170	43	18	24	13	1.86
153546--153737	86	2.2	85	85	1	258	41	19	23	15	1.89
153733--153795	19	3.3	19	93	0	99	15	15	23	44	1.86
153934--153970	14	2.6	14	91	0	65	45	21	0	32	1.52
155323--155389	21	3.2	21	66	19	50	17	20	37	23	1.94
156147--156174	9	3.1	9	100	0	56	32	0	57	10	1.33
157412--157512	20	5.2	20	84	7	127	47	17	21	12	1.81
157410--157536	19	6.8	19	79	12	147	47	18	22	11	1.81
157410--157536	52	2.3	57	88	9	183	47	18	22	11	1.81
157553--157609	14	3.7	14	72	20	51	10	22	22	43	1.84
157548--157617	33	2.1	33	97	0	131	10	22	20	47	1.79
157601--157672	20	3.5	20	84	5	92	12	16	19	51	1.76
158235--158445	20	10.4	21	80	11	253	19	18	25	36	1.95
158235--158506	40	6.8	40	85	5	323	19	18	25	37	1.94
158235--158506	81	3.4	81	85	5	347	19	18	25	37	1.94
158454--158506	20	2.7	20	91	5	81	13	18	24	43	1.86
158556--158609	20	2.7	19	75	8	63	16	18	31	33	1.93
165318--165362	19	2.3	19	88	3	63	37	15	17	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165288--165362	20	3.8	19	77	10	71	40	12	17	30	1.86
168768--168978	36	5.9	36	97	0	395	41	17	16	24	1.89
175284--175494	36	5.9	36	93	0	332	44	15	13	27	1.84
175991--176016	12	2.2	12	100	0	52	61	7	0	30	1.24
176388--176420	17	2.1	16	88	11	50	54	3	0	42	1.15
178481--178589	42	2.5	43	75	10	105	59	13	0	25	1.40
184260--184316	2	28.5	2	100	0	114	49	0	0	50	1.00
185774--185848	25	3.1	26	74	20	81	48	2	0	49	1.15
185815--185981	31	5.8	29	68	20	75	46	0	4	49	1.21
185951--186001	23	2.2	23	82	0	57	45	1	1	50	1.24

Tables:   1   2   3   4   5   6   7   8