genome.fa.s8241.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008241.1 Hibiscus syriacus cultivar Beakdansim tig00110889_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1355325

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 875 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187582--187627	23	2.0	23	100	0	92	43	13	8	34	1.74
190531--190607	29	2.7	27	80	15	75	68	0	16	14	1.21
192287--192948	105	6.3	105	90	1	999	22	18	25	33	1.97
203156--203194	14	2.6	15	88	8	53	76	0	2	20	0.90
204630--204676	2	25.0	2	87	12	73	51	0	0	48	1.00
210682--211121	221	2.0	219	98	1	846	35	18	15	30	1.92
213759--213993	72	3.3	71	87	5	329	31	27	17	23	1.97
220136--220163	13	2.2	13	100	0	56	46	0	7	46	1.30
221021--221075	21	2.6	21	85	0	74	20	25	18	36	1.94
221060--221128	20	3.4	20	90	6	86	37	18	18	24	1.94
221098--221138	20	2.0	20	85	0	55	34	19	21	24	1.97
221562--221735	20	8.6	20	80	7	190	18	18	25	36	1.94
221564--221796	81	2.9	81	79	11	208	18	18	25	37	1.93
221744--221796	20	2.7	20	91	5	81	13	18	24	43	1.86
221562--221796	40	5.8	41	75	10	144	18	18	25	37	1.93
229993--230041	24	2.0	24	88	0	71	51	2	0	46	1.12
234650--234694	21	2.1	22	83	4	56	24	22	4	48	1.68
237624--237663	21	1.9	21	94	0	71	30	15	7	47	1.72
237658--237756	33	3.0	33	94	1	164	32	7	15	45	1.73
237742--237796	13	4.2	13	75	13	58	34	3	12	49	1.59
238211--238244	18	1.9	18	88	5	52	41	11	8	38	1.73
238192--238248	15	3.7	15	77	9	51	35	12	10	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238338--238369	16	2.0	17	88	11	50	43	21	21	12	1.86
238684--238713	15	2.0	15	93	0	51	63	10	13	13	1.52
245749--245816	27	2.6	27	90	4	113	30	11	14	42	1.82
249517--249608	27	3.4	27	93	0	166	30	13	17	39	1.87
249822--249914	20	4.7	20	77	10	109	37	22	19	20	1.94
249841--249932	40	2.3	40	96	0	166	35	23	19	20	1.95
249861--249932	20	3.6	20	75	14	76	34	26	19	19	1.96
250111--250176	22	3.0	22	84	0	87	25	37	13	22	1.91
250514--250562	20	2.5	20	86	0	62	20	18	24	36	1.94
250530--250606	20	3.8	20	87	1	100	14	15	19	50	1.78
252396--252430	11	3.3	11	96	4	63	0	5	28	65	1.15
252479--252530	20	2.6	20	93	0	86	40	25	17	17	1.90
252614--252659	23	2.0	23	91	0	74	52	13	21	13	1.73
252685--252756	20	3.6	20	90	0	99	26	16	22	34	1.95
252709--252767	20	3.0	20	87	0	73	22	15	23	38	1.92
252683--252771	40	2.2	40	79	0	97	22	16	23	37	1.94
253255--253359	21	5.0	20	68	12	68	20	36	19	23	1.95
253253--253362	42	2.6	42	77	8	109	20	36	19	23	1.95
254904--254957	14	3.5	14	73	22	54	44	20	24	11	1.83
254884--254979	33	2.8	33	90	3	138	44	20	21	12	1.85
254994--255078	33	2.5	33	90	1	125	12	21	18	47	1.82
255061--255128	20	3.7	20	67	28	69	16	20	26	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257132--257158	14	1.9	14	100	0	54	7	11	29	51	1.64
257355--257408	24	2.2	24	93	0	90	40	20	18	20	1.91
258239--258305	20	3.3	20	91	0	107	23	19	25	31	1.98
258292--258384	20	4.7	20	95	0	168	19	21	20	38	1.93
258381--258426	21	2.2	21	88	0	65	41	17	23	17	1.90
260273--260303	15	2.1	15	93	0	53	58	12	9	19	1.62
260345--260421	33	2.4	32	89	4	127	44	15	9	31	1.78
260410--260451	21	2.0	21	90	0	66	50	7	11	30	1.66
262742--262781	12	3.1	12	80	19	53	20	17	15	47	1.83
262741--262780	15	2.9	14	85	14	57	20	17	15	47	1.83
264288--264345	29	2.0	28	86	3	80	53	3	8	34	1.49
273963--274024	22	2.8	22	87	0	97	27	24	20	27	1.99
275544--275591	21	2.3	21	89	3	80	18	16	29	35	1.93
276073--276124	17	2.9	17	81	16	52	71	0	1	26	0.97
276083--276136	23	2.3	23	84	6	65	72	0	3	24	1.01
277301--277345	23	1.9	24	81	4	56	55	4	0	40	1.20
277324--277675	37	9.6	35	85	7	311	44	6	3	45	1.48
277307--277674	74	5.1	71	82	9	381	44	6	3	45	1.48
277308--277675	110	3.4	107	81	9	406	44	6	3	44	1.48
284604--284656	20	2.6	21	87	3	81	22	13	28	35	1.92
291020--291067	19	2.5	20	86	3	62	50	6	12	31	1.65
292377--292446	20	3.5	20	88	1	88	35	11	20	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292438--292488	21	2.4	21	90	0	75	39	15	17	27	1.90
292541--292591	21	2.4	21	90	0	75	37	17	17	27	1.93
300838--300880	21	2.1	21	87	8	63	44	4	0	51	1.22
303083--303321	119	2.0	119	100	0	478	37	21	11	29	1.89
310799--311040	117	2.0	123	91	7	399	45	2	9	42	1.51
311387--311435	24	2.1	24	96	3	91	28	16	0	55	1.42
319098--319138	7	6.0	7	85	2	57	12	24	2	60	1.43
322663--322771	27	4.0	27	81	10	114	76	0	13	9	1.07
322665--322771	28	3.9	28	80	11	114	77	0	13	8	1.03
322695--322771	35	2.1	37	90	4	122	80	0	11	7	0.90
323681--324268	105	5.6	105	96	0	1059	36	19	22	21	1.96
334533--334594	23	2.7	23	75	2	63	25	17	24	32	1.97
337847--337882	10	3.7	10	88	7	56	61	2	0	36	1.11
339900--339996	45	2.2	45	81	3	106	20	21	18	39	1.93
341587--341612	5	5.2	5	100	0	52	80	0	0	19	0.71
341836--341900	2	32.5	2	100	0	130	50	0	0	49	1.00
343787--343876	43	2.1	44	87	6	130	22	16	21	40	1.92
344270--344471	61	3.3	61	89	0	287	26	13	23	36	1.92
357592--357644	19	2.7	19	85	8	72	56	5	18	18	1.61
363146--363853	6	119.8	6	93	6	1227	33	0	16	50	1.46
363850--364347	6	83.8	6	92	5	755	49	16	3	30	1.61
366061--366791	6	123.7	6	93	6	1264	32	0	17	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367205--368575	6	231.7	6	94	4	2459	50	16	0	32	1.49
372216--372268	19	2.7	19	83	11	72	52	7	20	18	1.69
377333--377520	2	96.0	2	64	22	62	47	3	3	45	1.36
377356--377520	13	12.5	13	72	17	101	47	4	3	45	1.37
377356--377523	28	5.7	30	72	14	111	47	4	2	45	1.37
377332--377519	13	16.1	11	70	18	61	48	3	3	44	1.36
377824--377971	2	76.0	2	66	19	73	47	2	4	45	1.38
378135--378238	49	2.1	49	80	3	111	50	10	6	32	1.63
378222--378285	7	9.3	7	75	3	58	50	31	0	18	1.48
378447--378496	23	2.1	24	92	3	84	48	2	0	50	1.12
378608--378673	31	2.2	31	91	2	107	42	7	3	46	1.47
379327--379381	20	2.6	21	80	8	67	45	5	9	40	1.59
379352--379407	17	3.2	17	74	2	58	48	3	7	41	1.48
379480--379526	7	6.7	7	92	0	76	48	38	0	12	1.41
379933--380003	16	4.4	16	92	0	115	39	14	26	19	1.90
380500--380530	3	10.7	3	93	6	55	67	32	0	0	0.91
387807--387852	24	2.0	23	86	4	65	60	8	8	21	1.53
389608--390045	5	89.6	5	65	21	96	51	5	2	40	1.37
389648--389779	13	11.2	11	72	18	72	55	3	1	40	1.25
389608--389993	7	55.0	7	66	21	134	51	5	2	40	1.36
389608--389940	35	9.4	35	68	18	167	52	4	2	40	1.34
389674--390080	2	217.5	2	64	25	99	50	6	1	41	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389652--389781	48	2.7	48	81	9	158	54	3	1	40	1.25
389724--389933	27	7.9	27	69	23	101	50	5	2	41	1.37
398728--398766	21	1.9	20	89	5	60	25	15	23	35	1.94
413274--413352	20	3.7	20	69	18	68	18	25	11	44	1.83
413254--413365	46	2.4	46	87	0	170	22	20	11	45	1.83
413867--413918	22	2.4	22	100	0	104	23	17	23	36	1.95
418672--418706	18	1.9	18	88	11	54	25	17	8	48	1.75
420144--420445	46	6.6	46	85	4	371	21	21	11	44	1.84
420208--420280	20	3.3	20	76	20	83	23	20	12	43	1.85
420144--420448	138	2.2	138	85	4	411	21	21	11	44	1.84

Tables:   1   2   3   4   5   6   7   8