genome.fa.s8241.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008241.1 Hibiscus syriacus cultivar Beakdansim tig00110889_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1355325

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 875 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1112542--1112607	28	2.3	28	84	10	80	50	12	9	28	1.70
1113099--1113149	17	2.9	18	72	16	52	62	0	3	33	1.13
1114085--1114114	3	9.7	3	92	7	51	30	3	0	66	1.07
1114483--1114527	19	2.4	19	81	11	56	51	2	0	46	1.13
1114986--1115084	32	3.1	31	72	12	85	31	23	16	29	1.96
1119190--1119222	13	2.4	14	90	5	50	39	0	6	54	1.25
1128570--1128603	16	2.1	16	89	10	52	64	5	2	26	1.30
1142838--1142884	21	2.3	21	96	3	78	55	8	8	27	1.59
1142838--1142884	20	2.3	20	96	3	85	55	8	8	27	1.59
1142839--1142996	39	4.0	39	78	8	160	39	12	13	34	1.82
1142955--1143041	24	3.5	24	85	13	122	36	16	17	29	1.91
1142944--1143041	51	1.9	52	91	6	164	34	16	18	30	1.93
1147417--1147463	16	2.7	17	80	12	51	57	0	0	42	0.98
1148013--1148042	15	2.1	14	93	6	51	50	0	0	50	1.00
1176525--1176948	103	4.1	103	97	0	794	26	13	23	36	1.92
1176964--1177009	23	2.0	23	82	0	56	21	19	26	32	1.97
1178130--1178165	15	2.4	15	90	0	54	27	13	27	30	1.94
1180245--1180273	14	2.1	14	100	0	58	48	0	0	51	1.00
1181157--1181220	27	2.4	27	86	5	85	56	0	3	40	1.15
1181178--1181249	25	2.8	25	78	18	67	54	0	4	41	1.20
1181200--1181258	21	2.5	22	81	13	66	54	0	5	40	1.23
1181195--1181260	23	2.9	23	72	20	66	54	0	4	40	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1182022--1182089	31	2.2	31	94	0	118	52	13	4	29	1.59
1182498--1182557	16	3.9	15	82	8	68	26	1	1	70	1.07
1182510--1182551	8	5.5	8	83	11	61	26	0	0	73	0.83
1183659--1183704	17	2.5	20	79	13	62	45	0	4	50	1.21
1188701--1188755	27	2.0	27	85	0	74	29	7	34	29	1.84
1194445--1194499	27	2.0	27	89	0	83	29	5	38	27	1.79
1198933--1198985	12	4.5	12	77	17	58	33	0	1	64	1.05
1199009--1199080	26	2.9	25	81	10	76	41	0	1	56	1.07
1198947--1199102	63	2.5	66	91	8	263	39	0	1	58	1.09
1199028--1199117	29	3.4	26	77	14	87	42	1	1	55	1.14
1198947--1199102	64	2.5	62	91	6	212	39	0	1	58	1.09
1199112--1199158	18	2.5	19	76	16	53	36	0	0	63	0.94
1199619--1199678	31	1.9	31	90	6	95	43	8	6	41	1.61
1199800--1199863	30	2.1	30	100	0	128	21	21	32	23	1.98
1201351--1201384	18	1.9	18	88	5	52	17	0	8	73	1.08
1208957--1209010	27	2.0	27	85	3	72	20	7	27	44	1.78
1210928--1210972	2	22.5	2	100	0	90	51	0	0	48	1.00
1211720--1211832	22	5.4	22	77	10	112	18	18	23	38	1.93
1211741--1211788	19	2.5	19	96	0	87	18	18	18	43	1.88
1211943--1211969	6	4.5	6	100	0	54	33	51	14	0	1.43
1212621--1212672	20	2.6	20	96	0	95	44	23	23	9	1.82
1213041--1213100	25	2.4	26	83	10	81	41	1	0	56	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1220011--1220080	18	4.0	17	76	9	70	37	8	17	37	1.80
1220011--1220080	35	2.0	35	83	5	88	37	8	17	37	1.80
1221649--1221727	30	2.6	30	79	16	90	10	6	3	79	1.03
1221688--1221739	23	2.3	22	80	9	68	7	7	3	80	1.00
1222967--1223092	63	2.0	63	100	0	252	34	22	11	31	1.89
1236494--1236548	19	2.8	21	81	10	71	36	29	14	20	1.92
1236684--1236712	13	2.1	14	93	6	51	48	17	20	13	1.81
1237119--1237217	50	2.0	49	96	2	180	26	15	23	35	1.94
1238716--1238756	11	3.5	12	78	15	50	29	0	7	63	1.21
1239532--1239571	21	1.9	21	100	0	80	27	32	20	20	1.97
1246330--1246397	32	2.1	32	81	10	77	45	1	2	50	1.26
1246708--1246923	108	2.0	108	89	0	333	30	19	24	25	1.98
1247689--1247717	12	2.3	13	94	5	51	68	0	27	3	1.05
1254055--1254103	2	24.5	2	100	0	98	48	0	0	51	1.00
1254650--1254680	12	2.5	13	94	5	55	83	6	9	0	0.79
1257348--1257659	154	2.0	157	97	1	594	27	20	28	22	1.99
1258266--1258761	182	2.7	182	86	4	649	44	13	15	26	1.83
1258246--1258761	184	2.8	182	85	3	687	44	13	15	26	1.84
1258891--1258993	21	4.9	20	74	8	80	35	22	17	24	1.95
1258960--1259209	20	12.5	20	83	5	247	37	24	18	19	1.94
1260099--1260123	12	2.1	12	100	0	50	72	0	28	0	0.86
1262296--1262531	33	6.8	34	80	14	229	45	18	21	14	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1262310--1262531	19	12.7	19	76	18	241	45	18	20	15	1.85
1262310--1262531	71	3.2	71	79	12	228	45	18	20	15	1.85
1262338--1262525	52	3.6	52	97	0	349	46	17	21	14	1.83
1262521--1262637	53	2.2	53	98	1	227	13	23	17	44	1.85
1262540--1262637	19	5.4	19	84	13	143	14	22	17	45	1.84
1262744--1262779	14	2.6	14	86	4	56	47	22	0	30	1.52
1264694--1264809	19	6.6	18	75	16	102	45	25	18	9	1.80
1264694--1264809	33	3.3	35	77	11	114	45	25	18	9	1.80
1264805--1264933	19	7.3	19	75	17	125	8	17	28	45	1.77
1264805--1264896	33	2.8	33	93	3	150	7	18	28	45	1.76
1264981--1265447	93	5.1	93	98	1	904	46	19	12	21	1.83
1264981--1265447	184	2.5	186	98	1	904	46	19	12	21	1.83
1267148--1267235	14	5.7	14	73	19	68	43	23	23	9	1.82
1267140--1267251	33	3.5	32	92	6	190	45	21	23	9	1.81
1267268--1267324	14	3.7	14	75	20	60	8	24	22	43	1.81
1267252--1267332	33	2.5	33	95	0	144	8	22	22	46	1.78
1267309--1267384	21	3.7	21	80	3	100	13	25	15	46	1.82
1267308--1267385	41	1.9	41	94	0	138	14	25	15	44	1.84
1267275--1267384	21	5.8	20	71	17	99	12	24	17	45	1.83
1267884--1268077	20	9.6	20	82	5	221	19	19	25	35	1.95
1267884--1268077	60	3.2	60	83	0	253	19	19	25	35	1.95
1268064--1268146	21	4.0	21	73	6	78	25	16	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1268044--1268142	42	2.4	43	77	11	100	21	18	23	37	1.94
1268283--1268655	183	2.0	183	88	0	557	45	12	13	27	1.81
1268886--1268939	21	2.7	20	75	16	56	59	11	14	14	1.62
1268657--1269155	182	2.7	181	90	2	777	43	11	16	28	1.82
1269210--1269266	21	2.7	21	97	0	105	42	17	14	26	1.87
1269558--1269608	19	2.7	20	85	11	72	45	0	15	39	1.47
1269854--1269892	18	2.2	18	86	9	53	46	5	7	41	1.55
1270852--1270906	24	2.5	22	77	16	60	43	1	5	49	1.36
1271144--1271186	18	2.4	18	80	7	52	37	11	46	4	1.61
1271595--1271633	18	2.2	18	95	0	69	53	0	41	5	1.23
1272343--1272382	18	2.2	18	100	0	80	40	22	10	27	1.86
1273123--1273171	19	2.6	19	90	3	73	30	2	10	57	1.43
1273321--1274418	199	5.5	199	93	1	1857	41	15	14	27	1.86
1274768--1274809	15	2.8	15	85	0	57	19	50	4	26	1.67
1277407--1277449	21	2.0	21	86	0	59	46	16	13	23	1.83
1277541--1277824	140	2.0	140	87	2	410	42	17	13	26	1.87
1277681--1278617	199	4.7	198	86	4	1269	41	15	14	28	1.86
1277680--1278617	398	2.4	396	91	2	1475	41	15	14	28	1.86
1281037--1281563	198	2.7	197	81	5	557	40	14	14	31	1.86
1281463--1281678	115	1.9	115	86	3	310	35	12	17	35	1.87
1281259--1281875	313	2.0	312	95	0	1108	37	13	16	32	1.88
1281571--1282017	204	2.2	197	84	7	580	38	14	16	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1282034--1282078	23	2.0	23	95	0	81	37	20	8	33	1.83
1285704--1285766	23	2.7	23	85	0	90	17	17	26	38	1.92
1295434--1295488	24	2.3	24	87	0	74	43	7	27	21	1.79
1298818--1298891	16	4.6	16	87	0	103	41	6	25	25	1.80
1298818--1298891	32	2.3	32	95	0	130	41	6	25	25	1.80
1300072--1300186	57	2.0	57	91	3	187	34	16	10	38	1.83
1305957--1305996	13	3.0	13	85	7	53	50	2	0	47	1.14
1305957--1305989	14	2.4	14	90	5	50	48	3	0	48	1.17
1306973--1307034	20	3.0	20	86	4	88	29	6	22	41	1.78
1310809--1310848	12	3.2	12	93	6	71	15	55	15	15	1.71

Tables:   1   2   3   4   5   6   7   8