genome.fa.s8241.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008241.1 Hibiscus syriacus cultivar Beakdansim tig00110889_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1355325

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 875 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
614745--614811	20	3.3	20	81	4	80	26	20	31	20	1.98
614990--615047	30	2.0	29	90	10	91	44	17	5	32	1.70
614990--615049	29	2.0	30	93	6	104	43	16	6	33	1.74
618342--618439	21	4.7	20	81	10	99	24	18	32	24	1.97
618518--618577	29	2.0	31	93	6	106	43	16	6	33	1.74
621802--621883	12	6.7	12	88	5	128	29	15	32	21	1.95
621802--621894	25	3.8	25	94	2	154	27	17	31	23	1.97
621797--621883	37	2.3	38	90	3	133	28	16	33	21	1.95
621944--622041	21	4.7	20	82	10	117	24	20	32	22	1.98
622121--622178	30	2.0	29	90	10	91	44	17	5	32	1.70
622121--622180	29	2.0	30	93	6	104	43	16	6	33	1.74
622582--622640	21	2.8	21	81	0	73	30	18	25	25	1.98
623350--623392	19	2.3	19	88	8	61	46	11	0	41	1.40
624342--624367	13	2.0	13	100	0	52	30	0	30	38	1.58
625333--625363	16	1.9	16	93	0	53	38	0	6	54	1.26
625668--625714	8	5.8	8	78	14	51	36	2	0	61	1.08
626277--626344	35	1.9	35	90	0	109	45	13	10	30	1.76
626584--626625	2	21.0	2	100	0	84	50	0	0	50	1.00
634453--634507	20	2.8	19	86	10	76	30	20	23	25	1.98
634827--635504	59	11.5	60	75	9	540	36	9	23	30	1.87
634835--635472	118	5.4	118	88	4	819	35	9	23	30	1.87
634826--635513	177	3.9	177	76	8	625	36	9	23	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
635586--635759	44	4.0	44	90	4	246	41	8	16	33	1.78
637640--637728	23	3.8	24	77	12	96	19	24	25	30	1.98
638288--638333	22	2.1	22	95	0	83	17	21	34	26	1.95
642346--642400	26	2.1	26	100	0	110	23	45	18	12	1.83
642775--642830	26	2.2	26	96	0	103	25	42	16	16	1.87
642233--643093	430	2.0	428	92	0	1427	24	31	16	27	1.97
646710--646734	2	12.5	2	100	0	50	0	48	0	52	1.00
654482--654559	41	1.9	41	84	5	104	30	21	15	32	1.94
661706--661756	23	2.3	22	83	6	59	39	1	3	54	1.30
664870--664898	2	14.5	2	100	0	58	0	48	0	51	1.00
676060--676107	21	2.3	21	85	7	62	37	10	20	31	1.87
679793--679840	23	2.1	23	96	0	87	35	29	22	12	1.91
680146--680187	22	1.9	22	85	9	59	33	19	9	38	1.84
680303--680331	2	15.0	2	92	7	51	48	0	0	51	1.00
680656--680710	20	2.7	21	78	13	62	21	27	18	32	1.96
682820--682872	8	7.0	7	83	8	52	50	5	0	43	1.25
682830--682929	15	6.6	15	76	12	64	48	2	6	44	1.39
682830--682872	2	22.5	2	86	9	63	51	2	0	46	1.13
682856--682951	22	4.9	21	70	23	66	46	3	7	42	1.47
683162--683287	51	2.4	50	73	12	119	42	6	7	44	1.57
683213--683331	62	2.0	60	91	3	193	40	7	7	44	1.61
683200--683451	95	2.7	94	79	13	236	39	9	6	43	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
683195--683330	18	7.3	18	68	19	66	39	8	8	44	1.64
683557--683645	20	4.3	20	75	12	74	46	6	2	44	1.42
683541--683639	44	2.4	40	74	21	98	46	8	1	44	1.39
683599--683664	29	2.2	28	89	5	78	46	6	3	43	1.43
683557--683645	2	42.0	2	71	18	56	46	6	2	44	1.42
683606--683704	44	2.3	43	81	8	119	47	7	4	41	1.49
683718--683957	18	13.2	18	66	23	103	42	7	7	42	1.61
683740--683946	33	6.8	33	74	16	203	42	7	8	42	1.62
683718--683991	58	5.1	51	82	11	259	42	7	8	41	1.62
683773--683991	58	3.9	58	88	5	310	42	8	8	41	1.64
683806--683854	25	2.0	25	87	0	71	40	8	10	40	1.69
683865--683912	25	1.9	25	86	0	69	43	8	6	41	1.60
684051--684180	61	2.1	61	88	2	190	47	6	11	34	1.65
684302--684335	17	1.9	17	88	5	50	8	20	5	64	1.43
684334--684378	18	2.4	20	82	14	60	17	35	4	42	1.70
684393--684767	123	3.0	123	87	3	538	27	28	7	36	1.84
684903--684997	30	3.2	29	80	8	102	34	45	2	17	1.61
684941--685020	12	6.8	11	76	18	56	35	47	2	15	1.58
684988--685017	11	2.6	11	94	5	51	40	43	6	10	1.64
684902--684997	6	16.0	6	76	16	60	34	45	2	17	1.60
685192--685281	31	2.9	31	88	1	137	27	4	21	46	1.70
686540--686807	133	2.0	133	100	0	536	29	16	16	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
687752--687816	20	3.2	20	89	4	96	16	13	12	56	1.66
687737--687816	40	2.0	40	85	4	108	15	13	13	57	1.66
688628--688756	51	2.6	48	86	7	168	48	5	3	42	1.41
690627--690678	20	2.6	20	96	0	95	38	26	13	21	1.90
690734--690927	20	9.6	20	76	8	76	35	25	19	19	1.95
690730--690927	40	5.0	39	81	4	200	35	26	19	19	1.95
690734--690926	60	3.2	60	83	0	251	35	25	19	19	1.95
691306--691376	33	2.2	33	92	0	115	11	22	18	47	1.80
691456--691538	19	4.6	19	72	17	86	43	20	25	10	1.84
691454--691509	20	2.8	20	86	2	78	42	17	26	12	1.85
691495--691549	14	3.6	14	73	21	56	41	23	25	9	1.83
691495--691565	33	2.2	33	94	0	124	43	25	22	8	1.81
691561--691657	19	5.7	19	70	24	81	10	24	22	42	1.85
691583--691671	14	5.7	14	74	24	72	8	25	23	41	1.83
691566--691679	33	3.5	33	93	1	203	9	24	21	44	1.82
693367--693826	181	2.5	184	97	1	872	22	12	18	46	1.83
693367--693826	93	5.0	93	95	3	860	22	12	18	46	1.83
693840--693898	19	3.4	19	73	22	74	45	30	16	6	1.74
693824--693898	33	2.3	33	95	4	134	46	29	17	6	1.73
693916--693971	14	3.7	14	76	17	58	10	21	23	44	1.83
693899--694026	32	3.8	33	86	7	159	10	18	24	46	1.81
695902--695937	14	2.6	14	95	0	63	33	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
696043--696144	19	5.6	19	84	13	151	44	17	23	14	1.86
696172--696481	19	17.4	19	82	14	403	14	20	18	46	1.84
696152--696481	146	2.4	139	88	7	481	14	21	18	46	1.84
696172--696450	52	5.2	55	92	4	391	14	21	17	46	1.83
696250--696481	52	4.4	50	82	10	234	14	21	18	46	1.84
698939--698985	24	2.0	24	87	8	69	38	21	14	25	1.92
699666--700034	20	18.5	20	86	5	451	20	18	26	34	1.96
708789--708822	9	3.9	9	92	7	52	58	0	0	41	0.98
708794--708831	14	2.6	14	87	4	58	57	0	0	42	0.98
714772--714866	21	4.6	20	79	8	100	24	13	21	41	1.89
714772--714866	42	2.3	42	88	0	145	24	13	21	41	1.89
714921--714968	23	2.1	23	88	0	69	14	20	22	41	1.89
715947--716005	20	2.7	22	75	17	68	25	22	28	23	1.99
722638--722695	20	2.8	20	81	5	62	24	32	25	17	1.96
729279--729367	46	1.9	46	95	0	160	26	11	14	47	1.78
729785--729872	44	2.0	45	88	2	133	40	27	5	26	1.78
730811--730860	20	2.6	20	87	6	68	40	10	26	24	1.86
731011--731082	37	2.0	37	81	8	85	47	4	2	45	1.36
732970--733188	51	4.3	51	80	3	156	17	33	17	31	1.94
735411--735497	30	2.9	30	89	0	138	19	20	29	29	1.97
736144--736198	3	19.0	3	77	7	60	32	3	1	61	1.24
736149--736200	11	4.8	11	75	13	54	30	1	1	65	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
739884--739927	23	1.9	23	81	9	54	40	20	13	25	1.89
746446--746584	75	1.9	74	81	4	172	54	10	22	12	1.68
747359--747464	43	2.5	43	93	0	185	30	32	15	22	1.94
747359--747476	43	2.7	43	88	7	170	30	29	17	22	1.97
747722--748046	159	2.0	161	96	3	609	28	24	21	26	1.99
749499--749549	2	26.5	2	84	15	72	45	1	0	52	1.12
754034--754074	18	2.2	19	91	8	66	68	14	0	17	1.22
754042--754082	17	2.3	18	87	4	66	63	12	0	24	1.28
758405--758458	20	2.7	20	77	11	74	27	31	14	25	1.95
758482--758573	19	4.7	20	82	2	71	38	21	14	26	1.91

Tables:   1   2   3   4   5   6   7   8