Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008241.1 Hibiscus syriacus cultivar Beakdansim tig00110889_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1355325

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 875 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1310808--1310848
13
3.2
13
93
6
75
14
56
14
14
1.69
1313924--1313955
15
2.1
16
94
5
57
6
25
18
50
1.70
1314706--1314737
16
2.0
16
93
0
55
34
25
6
34
1.81
1315143--1315182
12
3.2
12
93
6
71
15
55
15
15
1.71
1315142--1315182
13
3.2
13
93
6
75
14
56
14
14
1.69
1315557--1315636
2
40.0
2
100
0
160
50
0
0
50
1.00
1317370--1317407
20
1.9
20
88
0
58
44
15
0
39
1.47
1321472--1321496
2
12.5
2
100
0
50
52
0
0
48
1.00
1328956--1328989
15
2.3
15
89
0
50
55
2
0
41
1.15
1333346--1333404
29
2.0
29
100
0
118
28
16
13
40
1.87
1334640--1334681
21
2.0
21
90
0
66
26
21
26
26
1.99
1334710--1334749
20
1.9
21
85
10
55
37
37
10
15
1.80
1335034--1335075
21
2.0
21
95
0
75
26
28
21
23
1.99
1335188--1335258
20
3.9
19
77
17
71
16
25
35
22
1.95
1338220--1338289
34
2.1
32
86
5
95
22
30
15
31
1.95
1338572--1338613
21
2.0
21
95
0
75
26
28
21
23
1.99
1338727--1338782
15
3.5
15
76
21
60
19
25
35
19
1.95
1338726--1338809
33
2.5
33
94
3
141
17
27
34
20
1.95
1338775--1338834
20
3.0
20
90
4
95
15
30
35
20
1.93
1338785--1338842
20
3.0
19
87
5
64
15
31
31
22
1.95
1339183--1339440
135
1.9
130
91
3
417
32
28
15
22
1.95
1339865--1339955
31
2.8
32
67
14
80
47
9
0
42
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1340679--1340731
27
2.0
27
82
10
65
49
0
1
49
1.12
1347337--1347396
30
2.0
30
93
6
104
33
6
16
43
1.74
1347480--1347528
21
2.3
21
92
0
80
22
40
14
22
1.90
1347598--1347668
20
3.5
20
79
7
81
19
28
22
29
1.98
1347598--1347677
41
2.0
41
87
9
119
20
27
25
27
1.99
1347781--1347820
20
1.9
22
90
10
66
37
40
10
12
1.77
1349094--1349123
3
10.3
3
92
7
53
63
0
36
0
0.95
1350899--1350957
30
2.0
30
93
6
102
35
3
16
44
1.65
1351038--1351157
21
5.7
21
83
13
140
22
35
20
22
1.96
1351090--1351157
13
4.9
14
70
21
54
23
32
20
23
1.98
1351362--1351401
20
1.9
22
90
10
66
37
40
10
12
1.77
1352325--1352580
125
2.0
125
90
1
406
26
19
16
37
1.93
1354039--1354099
23
2.7
23
87
2
88
36
21
26
16
1.94

Tables:   1   2   3   4   5   6   7   8

The End!