Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008280.1 Hibiscus syriacus cultivar Beakdansim tig00110940_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3557051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  17  of  17  ( 1944 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3519967--3520065
33
3.0
33
89
1
144
39
26
23
11
1.88
3519942--3520145
19
11.1
19
78
13
203
44
22
21
11
1.84
3520141--3520207
19
3.5
19
85
2
89
10
16
25
47
1.78
3520721--3520773
20
2.6
20
90
3
79
24
18
28
28
1.98
3520721--3520815
20
4.7
20
74
5
64
24
17
24
33
1.96
3520804--3520896
20
4.5
21
78
4
100
17
24
18
39
1.91
3520789--3520896
41
2.6
41
92
2
146
19
22
19
38
1.93
3528575--3528608
17
2.0
17
88
0
50
32
11
5
50
1.63
3528682--3528709
2
14.0
2
100
0
56
50
0
0
50
1.00
3529563--3529623
28
2.2
27
85
5
77
42
19
6
31
1.77
3530266--3530313
22
2.2
22
92
7
80
29
22
14
33
1.94
3536615--3536657
19
2.3
19
91
0
68
20
20
25
32
1.97
3543476--3543514
20
2.0
20
85
10
53
38
25
5
30
1.78
3545292--3545316
13
1.9
13
100
0
50
48
0
0
52
1.00
3545458--3545510
2
26.5
2
100
0
106
50
0
0
49
1.00
3547078--3547192
41
2.8
41
71
11
110
31
18
19
31
1.95
3547562--3547653
41
2.3
40
78
9
107
30
19
13
36
1.90
3547664--3547775
42
2.7
42
84
0
143
33
14
15
36
1.87
3550746--3551149
131
3.1
131
83
6
471
31
20
18
28
1.97
3551888--3552054
45
3.7
45
86
3
203
41
18
17
22
1.90
3551893--3552079
45
4.2
45
84
4
182
42
18
16
22
1.89
3552270--3552377
42
2.6
41
82
2
119
39
15
19
25
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3552263--3552551
38
7.3
38
76
10
249
38
16
17
26
1.91
3552225--3552553
119
2.7
118
83
4
338
38
16
17
26
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17

The End!