genome.fa.s8282.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008282.1 Hibiscus syriacus cultivar Beakdansim tig00110944_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1335609

Tables:   1   2   3   4   5   6   7   8   

This is table  6  of  8  ( 878 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
958129--958428	41	7.3	40	70	15	166	29	22	17	30	1.97
958129--958426	83	3.6	82	82	5	343	29	22	17	30	1.97
958203--958428	42	5.5	41	68	14	151	28	23	17	30	1.97
958196--958511	166	1.9	164	81	6	379	27	23	18	30	1.97
959661--959823	64	2.5	64	77	7	161	31	20	20	28	1.97
960605--960819	103	2.1	103	95	0	385	26	13	23	36	1.91
966398--966611	103	2.1	103	94	0	374	27	11	23	37	1.90
972419--972627	30	7.3	29	66	24	106	39	6	14	39	1.73
972411--972627	57	3.8	57	91	0	344	38	6	14	40	1.72
972449--972541	27	3.3	27	68	19	82	38	7	12	40	1.72
972709--972752	23	1.9	23	85	0	61	22	13	27	36	1.92
972749--972797	24	2.0	24	84	0	62	20	20	24	34	1.96
978424--978461	14	2.7	14	84	11	51	21	10	28	39	1.86
978729--978753	11	2.3	11	100	0	50	24	0	32	44	1.54
980591--980686	30	3.3	29	71	14	90	36	6	17	39	1.75
980583--980800	57	3.8	57	90	2	339	36	5	17	40	1.73
980621--980770	27	5.3	27	66	23	103	34	5	17	42	1.72
980874--980946	23	3.2	22	78	5	83	19	24	21	34	1.96
989103--989157	23	2.4	23	74	17	60	12	27	41	18	1.86
989180--989278	30	3.3	29	83	6	117	31	22	25	21	1.98
989227--989277	15	3.4	15	68	10	50	31	23	27	17	1.97
989554--989592	20	2.0	20	89	0	60	33	23	10	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
991463--991501	10	3.8	10	86	6	60	35	0	0	64	0.94
991458--991500	21	2.0	21	100	0	86	37	0	0	62	0.95
991458--991522	21	2.9	23	86	8	82	41	0	0	58	0.98
992173--992413	130	1.9	130	91	0	401	32	15	9	42	1.79
996396--996455	30	2.0	30	100	0	120	46	10	33	10	1.71
998205--998243	1	39.0	1	84	0	51	92	2	0	5	0.46
998294--998592	73	4.2	71	75	14	242	44	7	4	43	1.51
998311--998588	36	7.7	36	77	13	252	45	7	3	42	1.52
998326--998586	140	1.9	139	84	5	357	45	7	4	42	1.52
999169--999966	326	2.4	321	80	7	880	25	20	24	29	1.99
999172--999966	83	9.7	82	74	8	656	25	20	24	29	1.99
999356--999966	243	2.5	244	86	3	820	25	20	24	30	1.99
1001125--1001289	90	1.8	90	84	7	228	31	18	18	30	1.95
1004913--1004946	14	2.5	13	86	9	50	76	2	8	11	1.12
1004964--1005035	24	3.0	24	84	10	94	77	4	6	11	1.09
1004975--1005054	22	3.6	22	80	12	83	77	2	7	12	1.07
1005116--1005189	26	2.9	26	80	11	66	62	5	2	29	1.31
1005157--1005204	3	16.3	3	95	4	89	68	0	0	31	0.90
1013881--1013956	32	2.4	32	80	8	84	36	11	18	32	1.87
1016208--1016270	20	3.1	20	83	2	81	30	17	22	30	1.96
1017238--1017291	21	2.5	21	93	3	90	42	29	7	20	1.79
1019193--1019246	22	2.5	22	96	0	99	27	14	12	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1021920--1021990	31	2.3	31	87	0	97	46	12	2	38	1.57
1022259--1022308	12	4.2	12	82	5	66	12	16	46	26	1.81
1022308--1022364	24	2.3	25	77	17	66	43	0	0	56	0.99
1023232--1023303	30	2.4	30	95	0	126	38	18	9	33	1.83
1023944--1024019	38	2.0	38	94	0	134	13	10	36	39	1.79
1023999--1024023	5	5.0	5	100	0	50	0	20	60	20	1.37
1024143--1024221	38	2.1	39	90	4	126	11	11	39	37	1.77
1024790--1024835	18	2.7	17	80	9	58	30	30	4	34	1.77
1025784--1025810	14	1.9	14	100	0	54	22	7	7	62	1.46
1027550--1027611	31	2.0	30	87	3	88	41	4	8	45	1.55
1028429--1028533	51	2.1	51	88	0	156	21	17	32	28	1.96
1034675--1034733	21	2.7	21	89	5	82	66	1	0	32	1.02
1034681--1034740	16	4.1	15	71	18	54	68	1	0	30	0.99
1034703--1034740	17	2.2	18	90	4	60	71	2	0	26	1.00
1037276--1037316	20	2.0	20	85	0	55	19	4	9	65	1.40
1037922--1037987	16	4.2	16	75	11	64	48	31	10	9	1.69
1037972--1038055	32	2.6	32	90	0	123	54	17	8	19	1.67
1038221--1038381	60	2.7	60	78	4	155	32	19	5	42	1.74
1039352--1039458	21	5.1	20	82	11	126	15	26	38	19	1.92
1039352--1039458	20	5.1	21	82	11	139	15	26	38	19	1.92
1042185--1042289	21	5.0	21	83	6	133	17	26	36	20	1.94
1045012--1045077	21	3.0	22	79	14	66	21	24	36	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1045012--1045069	21	2.7	21	86	5	71	22	22	37	17	1.93
1047618--1047684	16	4.3	16	88	3	93	11	10	17	59	1.60
1047746--1047778	16	2.1	16	100	0	66	6	12	24	57	1.57
1048710--1048746	12	3.1	12	92	0	56	10	35	0	54	1.36
1048740--1048770	12	2.6	12	100	0	62	22	19	6	51	1.69
1050978--1051011	13	2.5	14	90	4	52	26	0	0	73	0.83
1054900--1054976	2	38.5	2	100	0	154	50	0	0	49	1.00
1055770--1055842	20	3.6	20	70	3	65	27	20	26	26	1.99
1055832--1055907	22	3.5	22	71	20	79	34	26	18	21	1.96
1055778--1055925	42	3.5	41	88	2	190	30	23	21	24	1.99
1055886--1056051	85	2.0	85	81	0	197	33	17	23	25	1.96
1055959--1056301	146	2.4	144	84	1	443	31	16	25	26	1.96
1056284--1056426	42	3.4	42	77	2	146	32	20	20	25	1.97
1056470--1056722	52	4.7	52	79	6	229	41	18	10	30	1.84
1056527--1056719	52	3.7	53	81	3	230	40	18	10	30	1.84
1056528--1056719	105	1.8	105	84	2	260	41	18	10	30	1.84
1056848--1057096	130	1.9	129	85	2	338	38	13	20	27	1.90
1056839--1057099	65	4.1	64	78	6	260	37	13	19	30	1.90
1057258--1057327	36	1.9	36	85	5	97	40	12	24	22	1.89
1057259--1057336	36	2.2	36	81	9	88	41	15	20	23	1.90
1058497--1058549	14	3.9	14	82	12	74	3	15	7	73	1.20
1058486--1058552	24	2.6	25	82	17	77	2	13	7	76	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1058485--1058552	27	2.5	27	86	9	86	2	13	7	76	1.11
1059799--1059848	14	3.5	14	79	12	57	52	12	18	18	1.75
1062914--1062940	11	2.5	11	100	0	54	66	0	7	25	1.17
1066112--1066270	35	4.6	35	74	10	132	42	15	21	21	1.89
1067094--1067142	19	2.7	17	84	9	53	26	20	28	24	1.99
1067094--1067236	64	2.2	63	81	10	166	27	20	24	27	1.99
1069365--1069403	13	3.1	13	88	3	53	48	2	7	41	1.45
1073643--1073686	22	2.0	22	82	4	54	36	11	2	50	1.51
1073738--1073777	21	1.9	21	89	0	62	30	7	7	55	1.56
1075067--1075232	65	2.6	63	78	7	165	26	18	24	31	1.97
1080792--1080833	20	2.2	19	86	4	57	64	2	0	33	1.07
1080705--1080935	120	1.9	120	82	5	290	45	8	7	37	1.64
1081980--1082037	24	2.3	24	80	13	64	0	22	10	67	1.21
1082462--1082522	2	33.5	2	81	18	80	52	0	0	47	1.00
1082493--1082540	16	2.8	17	81	15	55	54	0	0	45	0.99
1082915--1083264	73	4.8	73	97	0	646	38	14	18	29	1.89
1083479--1083679	37	5.5	36	75	2	204	38	12	16	31	1.87
1083474--1083679	73	2.8	73	91	0	331	38	13	16	31	1.87
1083062--1083867	413	2.0	412	95	0	1459	36	13	16	33	1.89
1083721--1084050	167	2.0	167	91	2	538	37	13	13	34	1.85
1084563--1084617	22	2.5	22	93	0	101	40	14	10	34	1.81
1088947--1088981	13	2.7	13	81	0	52	2	11	0	85	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1094849--1094890	20	2.2	19	86	4	57	64	2	0	33	1.07
1094762--1094992	120	1.9	120	84	5	308	45	8	8	37	1.64
1096510--1096535	2	13.0	2	100	0	52	50	0	0	50	1.00
1096537--1096584	3	15.3	3	78	8	51	58	0	0	41	0.98
1096508--1096582	17	4.5	18	74	21	58	54	0	0	45	0.99
1096530--1096593	28	2.3	28	84	7	78	53	0	0	46	1.00
1096547--1096592	22	2.1	22	88	8	67	52	0	0	47	1.00
1098600--1098625	10	2.6	10	100	0	52	19	50	19	11	1.77
1098614--1098679	33	2.0	33	93	0	114	27	37	19	15	1.92
1098870--1098905	11	3.2	11	84	7	54	22	22	19	36	1.95

Tables:   1   2   3   4   5   6   7   8