genome.fa.s8282.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008282.1 Hibiscus syriacus cultivar Beakdansim tig00110944_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1335609

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 878 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214770--214830	23	2.6	24	89	5	97	3	57	6	32	1.41
216020--216113	4	25.5	4	68	16	60	50	0	0	50	1.00
216020--216113	6	17.0	6	76	16	60	50	0	0	50	1.00
216020--216113	48	2.0	46	91	4	152	50	0	0	50	1.00
216210--216258	25	2.0	25	83	0	62	24	10	38	26	1.87
217955--217995	21	2.0	21	85	0	55	19	29	2	48	1.61
218537--218593	16	3.4	16	80	9	60	42	0	26	31	1.56
219135--219245	32	3.3	33	87	5	161	43	35	9	11	1.75
219774--220108	42	7.9	42	86	1	427	32	19	21	26	1.97
224016--224181	30	5.6	30	75	9	137	58	9	15	17	1.62
224016--224174	59	2.7	59	87	5	214	57	9	15	17	1.63
225516--225553	3	12.7	3	100	0	76	65	0	0	34	0.93
225833--225947	40	2.7	42	77	11	121	22	14	36	26	1.93
225745--226054	134	2.4	129	83	5	372	23	18	32	25	1.97
226675--226745	18	3.8	18	73	14	72	32	32	18	16	1.94
234847--234885	21	1.9	21	94	5	71	10	10	2	76	1.10
236043--236086	15	3.0	15	80	3	54	81	6	11	0	0.86
238242--238282	6	6.8	6	94	0	64	9	51	0	39	1.35
240146--240180	18	1.9	18	88	0	52	28	31	20	20	1.97
241672--241713	21	2.0	21	90	0	66	47	9	14	28	1.75
241774--241849	35	2.1	36	83	7	93	42	14	14	28	1.85
241872--241994	36	3.4	37	85	5	162	36	13	20	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
243180--243219	20	2.0	20	90	4	64	0	7	12	80	0.91
245365--245414	20	2.5	20	87	6	66	34	22	26	18	1.96
245439--245509	19	3.5	19	80	12	79	30	15	25	28	1.96
245914--246088	79	2.2	79	91	0	278	37	10	24	28	1.89
246085--246162	20	3.6	20	71	18	66	43	11	23	21	1.85
246086--246190	46	2.3	46	91	0	165	45	12	20	21	1.83
246106--246202	26	4.0	26	76	15	107	49	12	17	20	1.79
248412--248446	2	17.5	2	100	0	70	51	0	0	48	1.00
250576--250615	20	2.1	19	85	4	53	35	17	30	17	1.93
250640--250728	19	4.5	19	82	9	106	32	13	24	29	1.93
250640--250728	41	2.2	40	82	7	110	32	13	24	29	1.93
251012--251189	34	4.9	34	81	14	212	35	11	26	25	1.90
250957--251155	79	2.5	79	95	0	353	36	11	26	25	1.90
251181--251266	26	3.6	25	74	18	92	45	12	22	19	1.84
251207--251284	20	3.6	20	71	18	75	43	11	24	20	1.85
251171--251299	46	2.8	46	89	1	195	44	10	20	23	1.83
251471--251513	19	2.3	19	95	0	77	41	2	9	46	1.48
254436--254488	19	2.8	20	82	5	56	41	5	3	49	1.44
255040--255280	30	8.1	30	80	8	235	57	8	14	19	1.62
255040--255273	59	3.9	60	83	5	244	57	8	14	19	1.62
255090--255273	61	3.1	58	85	6	244	58	8	14	19	1.60
255040--255247	91	2.3	89	85	3	283	58	8	13	19	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255549--255578	5	6.0	5	100	0	60	80	0	0	20	0.72
256718--256777	3	19.7	3	96	3	111	65	1	0	33	1.03
271627--271652	2	13.0	2	100	0	52	50	0	50	0	1.00
272684--272723	18	2.2	18	100	0	80	27	5	17	50	1.67
274690--274726	18	2.0	19	94	5	67	48	10	8	32	1.67
282295--282375	35	2.3	35	95	0	144	61	9	4	23	1.46
285041--285112	4	18.2	4	88	2	110	70	0	4	25	1.04
290173--290198	2	13.0	2	100	0	52	50	0	0	50	1.00
300652--300693	21	2.0	21	90	0	66	47	2	7	42	1.43
301862--301946	34	2.5	34	94	1	145	48	11	23	16	1.79
302687--302814	42	3.1	42	67	15	111	33	14	19	32	1.91
302687--302859	83	2.1	83	84	0	220	32	15	19	32	1.93
303143--303246	42	2.5	43	82	7	133	27	12	18	41	1.86
309116--309201	43	2.0	43	90	0	136	36	19	15	29	1.92
310125--310152	3	9.3	3	100	0	56	32	0	0	67	0.91
318778--318826	23	2.1	23	81	11	55	8	28	34	28	1.86
319435--319490	28	2.0	29	85	3	78	41	7	3	48	1.48
320359--320418	18	3.3	18	88	0	84	26	35	16	21	1.95
321671--321695	13	1.9	13	100	0	50	64	8	0	28	1.22
322379--322451	35	2.0	34	82	12	83	42	19	16	21	1.89
322903--322950	21	2.3	21	100	0	96	37	8	0	54	1.31
323546--323575	15	2.0	15	100	0	60	60	6	0	33	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325726--325759	7	4.9	7	96	0	59	44	41	0	14	1.45
325858--325966	35	3.0	36	90	5	166	44	18	5	31	1.72
325898--325958	21	3.2	21	68	29	64	42	19	4	32	1.73
325865--325993	35	3.6	36	83	9	133	41	17	6	33	1.77
330021--330056	16	2.2	17	95	5	65	44	19	0	36	1.51
330463--330582	35	3.3	36	89	5	181	43	20	5	31	1.73
330514--330574	21	3.2	21	65	29	64	42	21	4	31	1.74
330465--330609	35	4.1	36	83	11	142	41	19	6	33	1.76
335174--335217	21	2.1	21	91	4	72	20	0	25	54	1.45
335342--335394	26	2.0	26	92	0	88	33	11	15	39	1.83
336699--337122	214	2.0	214	96	0	785	35	25	16	22	1.95
337888--337922	11	3.0	11	88	12	52	68	2	0	28	1.04
337888--337926	13	3.2	12	89	10	62	66	2	0	30	1.05
337896--337944	17	2.6	20	72	24	52	63	6	0	30	1.19
340004--340046	18	2.4	18	84	7	52	23	9	2	65	1.34
350021--350402	55	7.0	55	92	0	586	35	19	11	33	1.88
351443--351485	19	2.4	18	81	11	52	41	2	0	55	1.12
351630--351669	2	20.0	2	100	0	80	50	0	0	50	1.00
355214--355257	21	2.1	21	83	4	54	20	11	2	65	1.35
361086--361136	26	2.0	26	88	0	75	58	9	19	11	1.60
361945--362001	26	2.2	26	83	0	69	26	17	26	29	1.97
363208--363258	18	2.9	18	82	11	61	68	5	0	25	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363237--363261	13	1.9	13	100	0	50	64	4	0	32	1.12
363217--363267	17	2.9	18	85	8	61	66	5	0	27	1.14
363233--363281	17	2.8	18	76	14	50	63	6	0	30	1.19
367725--367750	2	13.0	2	100	0	52	50	0	0	50	1.00
369630--369662	2	16.5	2	100	0	66	51	0	0	48	1.00
373552--373576	12	2.1	12	100	0	50	40	16	32	12	1.84
373957--373998	17	2.4	18	88	4	59	21	4	0	73	1.01
374873--374903	13	2.4	13	94	0	53	38	9	25	25	1.86
378941--378996	5	10.8	5	83	7	67	14	3	3	78	1.02
378938--378994	21	2.7	21	81	10	71	15	3	3	77	1.05
378941--378996	16	3.6	15	83	7	67	14	3	3	78	1.02
381960--382001	17	2.4	18	96	4	77	23	4	0	71	1.05
384021--384073	21	2.5	21	81	6	72	20	26	18	33	1.96
384048--384298	41	6.1	41	71	7	150	33	19	18	27	1.96
384063--384110	20	2.3	20	85	3	60	39	16	20	22	1.92
384134--384186	20	2.6	21	78	6	63	20	18	15	45	1.85
384190--384300	20	5.5	20	88	2	150	39	18	20	21	1.92
384190--384300	41	2.7	41	87	1	170	39	18	20	21	1.92
384845--384882	20	1.9	20	94	0	67	36	26	23	13	1.91
384901--384984	19	4.6	19	76	16	97	11	22	20	45	1.83
386678--386982	94	3.3	94	93	2	503	21	12	19	46	1.83
388843--388878	14	2.6	14	95	0	63	33	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388985--389031	19	2.5	19	92	0	67	46	21	19	12	1.82
389001--389064	33	1.9	33	90	6	103	48	23	17	10	1.78
389001--389074	19	4.2	19	78	19	88	50	22	16	10	1.76
389075--389225	19	8.7	19	65	21	89	11	22	20	45	1.82
389080--389205	33	3.8	33	92	0	207	11	22	19	46	1.81
389178--389232	20	2.8	19	83	2	65	18	21	21	38	1.94
391732--391785	24	2.2	24	90	0	81	40	20	16	22	1.91
392525--392721	20	9.7	20	76	9	139	23	18	23	34	1.97
392585--392662	41	1.9	41	89	0	120	21	17	23	37	1.94
392648--392761	21	5.6	20	77	7	95	21	21	19	38	1.93

Tables:   1   2   3   4   5   6   7   8