genome.fa.s8282.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008282.1 Hibiscus syriacus cultivar Beakdansim tig00110944_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1335609

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 878 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1226872--1226910	19	2.1	19	100	0	78	38	25	10	25	1.87
1228367--1228546	60	3.0	60	77	4	184	40	21	16	21	1.91
1229444--1229505	27	2.3	26	78	8	70	17	14	20	46	1.83
1233022--1233086	34	1.9	34	84	12	89	41	4	7	46	1.53
1238143--1238188	22	2.0	22	84	12	58	56	10	13	19	1.66
1238405--1238890	77	6.3	76	85	4	555	36	10	17	36	1.84
1238405--1238905	155	3.2	153	84	4	619	35	10	17	36	1.85
1238405--1238890	232	2.1	231	85	3	645	36	10	17	36	1.84
1245378--1245433	19	3.0	18	70	17	51	41	5	21	32	1.76
1253475--1253545	23	3.2	22	88	5	99	23	28	29	18	1.98
1253475--1253557	23	3.8	22	84	6	96	24	31	25	19	1.98
1255115--1255162	18	2.6	19	83	6	55	45	22	29	2	1.64
1255128--1255175	18	2.6	17	87	12	69	43	25	31	0	1.55
1255693--1255752	2	30.0	2	100	0	120	50	0	0	50	1.00
1266543--1266575	14	2.3	15	89	5	50	60	0	0	39	0.97
1273975--1274023	23	2.1	23	85	7	64	28	2	12	57	1.46
1299104--1299237	64	2.1	64	80	8	148	29	14	23	32	1.95
1299215--1299257	18	2.4	18	96	0	77	18	18	32	30	1.95
1307319--1307688	183	2.0	186	84	5	484	42	9	9	38	1.69
1318903--1318941	19	2.1	19	100	0	78	53	5	10	30	1.56
1327024--1327128	32	3.5	31	89	6	153	20	22	37	20	1.95
1327408--1327565	21	7.8	20	72	7	86	38	24	17	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1327533--1327753	20	11.1	20	84	1	219	36	24	18	19	1.94
1328443--1328488	23	2.0	23	86	4	65	26	13	21	39	1.90
1328662--1328686	12	2.1	12	100	0	50	72	0	28	0	0.86
1330998--1331239	19	13.7	19	76	19	258	44	17	23	14	1.85
1330967--1331239	52	5.2	53	95	4	477	44	17	23	14	1.85
1331229--1331345	53	2.2	53	96	1	218	14	23	17	43	1.87
1331248--1331345	19	5.4	19	83	13	134	15	22	17	44	1.86
1331452--1331490	14	2.8	14	85	14	62	43	17	0	38	1.50
1333389--1333434	19	2.4	19	88	3	65	45	26	15	13	1.82
1333405--1333501	19	5.8	18	68	26	79	46	20	21	11	1.82
1333407--1333496	31	2.8	31	91	5	137	46	21	21	11	1.81
1333513--1333571	14	3.9	14	76	20	64	6	16	28	47	1.72
1333497--1333620	33	3.7	33	91	1	185	8	17	27	45	1.78
1333497--1333588	19	5.4	18	72	24	83	7	17	28	46	1.75
1333546--1333602	14	3.7	14	72	20	51	8	22	24	43	1.81
1333715--1334026	92	3.4	93	95	3	569	44	19	13	22	1.85

Tables:   1   2   3   4   5   6   7   8

The End!