genome.fa.s8298.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008298.1 Hibiscus syriacus cultivar Beakdansim tig00110984_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1334650

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 725 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357584--357665	15	5.3	15	84	12	105	56	2	0	41	1.13
357597--357665	24	3.0	21	75	22	66	56	2	0	40	1.14
358389--358441	21	2.5	20	79	11	52	20	11	15	52	1.72
358481--358527	24	1.9	24	82	4	58	36	8	8	46	1.65
358879--358927	18	2.6	19	70	6	55	40	0	4	55	1.19
359649--359725	35	2.2	35	86	9	104	57	0	2	40	1.13
359656--359736	35	2.3	35	81	10	94	58	1	2	38	1.20
360119--360158	14	2.7	15	82	17	57	62	2	0	35	1.09
360119--360162	16	3.0	15	81	15	56	63	2	0	34	1.07
361228--361318	29	3.0	30	75	10	96	37	7	13	41	1.73
370942--371029	20	4.4	20	75	12	83	32	22	15	28	1.95
371693--371722	15	2.0	15	93	0	51	30	20	23	26	1.98
373522--373554	2	16.5	2	93	0	57	48	3	0	48	1.17
378165--378485	155	2.1	156	87	7	465	51	5	16	27	1.66
393339--393392	28	2.0	26	82	10	65	44	12	7	35	1.71
393633--393711	32	2.5	31	84	6	106	2	36	1	59	1.19
399318--399347	12	2.5	12	94	0	51	86	0	13	0	0.57
399599--399694	40	2.4	40	82	0	102	27	3	15	54	1.56
399639--399785	75	2.0	75	83	0	186	28	3	17	50	1.62
402148--402278	43	3.0	43	79	2	147	51	19	5	23	1.66
407465--407543	38	2.1	39	83	4	99	35	8	8	46	1.66
408105--408190	32	2.7	32	94	0	154	17	17	10	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412970--413095	50	2.5	50	80	2	146	15	36	27	20	1.93
416989--417035	9	5.2	9	81	0	58	12	36	19	31	1.89
416996--417038	15	2.9	15	85	0	59	11	37	20	30	1.89
417370--417428	18	3.3	18	90	0	100	23	20	28	27	1.99
418934--419155	111	2.0	111	95	0	399	44	10	8	36	1.69
419279--419319	10	4.1	10	84	12	57	39	0	29	31	1.57
421183--421235	27	2.0	26	96	3	97	24	7	18	49	1.74
426077--426116	21	1.9	21	84	0	53	37	7	2	52	1.43
427145--427234	43	2.1	43	97	0	171	36	5	13	44	1.67
431343--431394	25	2.2	23	82	6	59	44	1	15	38	1.58
431387--431419	17	2.0	17	88	5	50	63	0	0	36	0.95
432256--432313	3	19.7	3	92	3	100	32	0	34	32	1.58
434186--434273	45	1.9	46	88	2	133	28	18	25	28	1.98
437798--437880	23	3.9	21	81	7	78	19	24	31	25	1.98
446815--446849	15	2.3	15	100	0	70	5	31	8	54	1.54
448687--448726	21	1.9	21	85	10	55	35	10	2	52	1.48
455549--455689	31	4.5	31	99	0	273	39	22	19	18	1.93
459816--459952	31	4.5	31	92	6	237	38	21	20	18	1.93
459816--459953	59	2.3	61	94	3	253	38	22	20	18	1.93
475210--475234	11	2.3	11	100	0	50	52	0	8	40	1.31
479549--479612	24	2.7	24	82	4	76	53	14	23	9	1.69
482200--482230	3	10.3	3	100	0	62	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485265--485289	3	8.3	3	100	0	50	32	0	0	68	0.90
485643--485706	33	2.0	32	84	3	83	45	15	10	28	1.80
487198--487501	41	7.4	41	74	8	296	19	21	22	37	1.95
487196--487519	82	4.0	82	98	0	630	19	21	22	36	1.95
488223--488332	21	5.3	21	67	20	79	38	27	18	16	1.92
488244--488313	20	3.5	20	70	18	72	40	24	21	14	1.90
488215--488341	41	3.1	41	96	0	236	39	24	19	16	1.92
489163--489200	20	1.9	20	88	0	58	21	26	10	42	1.85
501076--501128	23	2.3	23	80	0	70	32	22	26	18	1.97
501736--501773	19	2.1	19	90	5	60	23	18	28	28	1.98
511368--511584	110	2.0	110	87	1	319	31	21	14	32	1.93
517672--517709	4	9.5	4	94	0	67	0	71	0	28	0.87
518823--518869	21	2.2	21	96	0	85	29	12	19	38	1.89
519635--519723	23	4.0	22	76	15	85	21	19	25	33	1.97
529174--529242	23	3.0	23	79	8	77	34	26	21	17	1.95
529619--529649	2	15.5	2	100	0	62	48	0	0	51	1.00
530844--531005	64	2.5	63	83	4	198	24	24	18	33	1.97
534529--534554	13	2.0	13	100	0	52	30	0	7	61	1.24
534802--534887	23	4.0	21	81	14	104	19	20	26	32	1.97
540774--540808	17	2.2	16	90	10	54	31	5	5	57	1.46
546853--547076	65	3.4	66	87	2	301	25	20	14	39	1.90
547075--547412	131	2.6	131	78	5	347	24	31	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
547621--547660	3	13.3	3	100	0	80	32	0	0	67	0.91
548084--548123	20	2.0	21	85	5	55	22	7	7	62	1.47
552160--552962	199	4.1	197	81	3	837	37	5	9	47	1.60
553000--553046	22	2.4	19	77	19	51	51	4	6	38	1.47
553371--553417	21	2.2	21	96	0	85	29	12	19	38	1.89
560794--560850	23	2.5	23	80	2	71	33	19	19	28	1.96
562818--562891	11	6.6	12	71	18	61	50	0	1	48	1.09
562874--562954	27	3.0	27	72	16	69	49	2	1	46	1.23
563045--563111	22	3.0	22	81	14	68	53	1	0	44	1.09
567140--567300	29	5.6	29	80	5	166	34	1	14	48	1.55
574368--574393	13	2.0	13	100	0	52	23	46	15	15	1.83
574407--574474	29	2.3	29	94	0	118	29	1	19	50	1.57
574470--574572	28	3.7	27	78	11	91	37	0	14	46	1.51
579433--579464	2	16.0	2	100	0	64	50	0	0	50	1.00
579689--580472	413	1.9	410	85	4	1080	44	7	8	40	1.62
580734--580763	15	1.9	16	93	6	53	40	6	6	46	1.56
582124--582160	14	2.6	14	91	0	56	21	8	5	64	1.40
584498--584540	21	2.0	21	95	0	77	60	11	9	18	1.57
586585--586643	30	2.0	30	82	0	73	13	32	20	33	1.91
587354--587407	22	2.6	20	83	16	74	24	9	9	57	1.59
592905--593025	17	6.8	18	75	15	78	7	18	0	74	1.04
592947--592990	12	3.4	12	77	17	52	4	18	0	77	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
592904--593024	8	13.9	8	76	19	93	7	18	0	74	1.04
592901--593037	9	15.5	8	74	17	87	7	18	0	74	1.04
602692--602792	47	2.1	47	85	7	132	41	19	11	26	1.86
604024--604124	47	2.1	47	85	7	132	41	19	11	26	1.86
607180--607437	51	4.9	51	91	1	345	27	27	15	29	1.96
607723--608049	175	1.9	175	99	0	645	28	21	16	33	1.95
615565--615604	17	2.4	17	100	0	80	17	45	22	15	1.85
615594--615644	7	7.4	7	93	4	86	17	29	27	25	1.98
624703--624734	11	3.1	11	86	13	50	37	0	0	62	0.95
631930--631989	22	2.7	22	84	7	68	23	31	26	18	1.97
632374--632423	25	1.9	27	84	8	68	54	2	4	40	1.31
637253--637299	3	16.7	3	87	12	73	63	0	0	36	0.94
637253--637297	17	2.7	17	96	3	83	64	0	0	35	0.94
641354--641392	2	19.5	2	100	0	78	51	0	0	48	1.00
645727--645786	10	6.3	9	77	9	57	15	26	30	28	1.96
645722--645780	29	2.0	29	87	6	84	15	23	28	32	1.95
645727--645786	19	3.2	18	75	11	57	15	26	30	28	1.96
652978--653022	20	2.4	18	88	7	63	13	24	26	35	1.92
653056--653098	22	2.0	22	95	0	77	18	46	25	9	1.79
653055--653087	17	1.9	17	100	0	66	18	48	24	9	1.76
654932--654961	2	15.0	2	100	0	60	50	0	0	50	1.00
656955--657003	25	2.0	25	87	0	71	55	2	2	40	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
658413--658484	30	2.4	30	81	2	83	16	27	23	31	1.96
659134--659166	14	2.3	15	85	15	52	6	6	51	36	1.51
662021--662064	21	2.1	21	91	0	70	31	0	11	56	1.35
662134--662195	8	8.2	8	72	13	60	41	1	9	46	1.46
662157--662195	14	2.7	15	88	4	53	38	2	10	48	1.51
662085--662189	22	4.7	23	71	10	83	42	3	7	45	1.50
662154--662270	52	2.3	49	76	19	121	40	1	6	51	1.39
662187--662263	26	3.0	26	90	0	118	44	1	3	50	1.28
662183--662269	26	3.5	24	76	15	88	41	1	4	52	1.29
662294--662412	24	5.0	23	72	13	80	44	5	6	43	1.52

Tables:   1   2   3   4   5   6   7