genome.fa.s8298.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008298.1 Hibiscus syriacus cultivar Beakdansim tig00110984_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1334650

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 725 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
821070--821870	165	4.8	165	80	6	719	25	19	24	30	1.98
821090--821870	249	3.1	249	89	2	1110	24	19	24	30	1.98
821103--821853	333	2.3	331	78	6	782	24	19	24	30	1.98
822084--822519	110	4.0	110	95	0	775	23	18	23	33	1.96
825101--825134	5	6.8	5	100	0	68	82	0	0	17	0.67
833086--833139	21	2.7	20	82	2	63	33	22	20	24	1.97
833162--833200	20	2.0	20	84	0	51	33	23	20	23	1.97
834344--834377	14	2.4	14	85	5	50	35	23	2	38	1.70
834557--834586	6	5.0	6	100	0	60	50	16	0	33	1.46
834938--834973	18	1.9	19	88	5	56	27	19	22	30	1.98
838314--838354	21	2.0	21	95	0	73	34	26	21	17	1.95
838379--838405	14	1.9	14	100	0	54	40	29	7	22	1.81
838655--838688	14	2.4	14	90	5	50	35	20	0	44	1.52
845751--845805	25	2.2	26	80	9	60	72	0	9	18	1.10
858411--858469	30	2.0	30	86	6	84	28	18	15	37	1.91
859562--859596	17	2.0	18	88	5	54	25	2	0	71	1.00
863526--863693	84	2.0	84	90	0	264	39	10	16	33	1.83
865316--865340	12	2.1	12	100	0	50	48	0	36	16	1.46
867447--867482	16	2.2	16	100	0	72	30	22	11	36	1.89
869271--869321	18	2.9	17	85	8	66	35	3	31	29	1.76
869893--869957	28	2.3	28	91	0	112	43	32	9	15	1.78
869919--869995	38	2.1	38	97	2	147	38	37	10	12	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
870544--870591	25	1.9	25	91	0	78	29	35	10	25	1.89
875008--875054	22	2.1	21	84	7	58	46	4	0	48	1.21
876460--876498	17	2.3	17	95	0	69	33	23	28	15	1.95
882211--882254	18	2.4	18	100	0	88	22	40	25	11	1.87
883646--883685	19	2.2	19	86	8	57	25	30	27	17	1.97
883677--883701	13	1.9	13	100	0	50	16	24	44	16	1.86
884465--884538	28	2.6	28	77	6	78	44	6	12	36	1.68
884873--885118	119	2.1	119	98	0	476	36	10	8	43	1.70
889632--889687	23	2.5	24	75	13	66	48	14	21	16	1.81
892162--892219	3	19.0	3	79	10	64	32	3	0	63	1.11
892165--892217	27	1.9	28	88	3	81	32	3	0	64	1.12
893438--893511	31	2.5	28	77	14	76	28	2	4	64	1.25
893522--893568	15	3.3	14	80	11	51	31	0	2	65	1.04
905078--905103	3	8.7	3	100	0	52	69	0	0	30	0.89
906086--906148	22	2.9	22	76	9	65	39	11	11	38	1.76
906457--907038	123	4.8	123	90	4	823	39	15	18	26	1.90
907232--907310	3	27.0	3	77	12	76	27	2	0	69	1.01
908467--908538	31	2.4	29	77	11	81	27	1	4	66	1.18
908549--908595	13	3.3	13	83	16	58	34	0	0	65	0.93
908588--908620	3	11.0	3	93	0	57	33	3	0	63	1.10
911276--911320	22	2.1	22	91	4	74	22	40	0	37	1.54
915569--915655	45	1.9	46	86	6	124	27	17	14	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
916403--916460	30	1.9	30	86	13	84	39	1	1	56	1.19
917165--917216	22	2.3	22	86	3	68	46	1	0	51	1.12
917313--917365	27	1.9	28	84	3	72	52	0	0	47	1.00
919606--919631	6	4.3	6	100	0	52	84	0	0	15	0.62
919804--919960	53	3.0	53	96	0	278	21	29	19	29	1.98
920338--920466	42	3.1	42	87	3	181	33	21	17	27	1.96
920505--920587	42	2.0	42	85	0	112	31	22	19	26	1.98
920640--920732	42	2.2	42	90	0	141	32	22	20	24	1.98
920455--920722	135	2.0	135	87	0	392	29	22	18	30	1.97
930563--930678	19	5.6	19	70	19	81	7	24	10	57	1.58
930545--930695	43	3.5	44	90	4	200	7	27	10	54	1.61
930556--930686	19	6.2	22	67	21	75	6	27	11	54	1.61
933622--933695	27	2.7	27	85	8	89	39	12	13	35	1.82
941521--941549	2	14.5	2	100	0	58	51	0	0	48	1.00
943448--943500	25	2.1	26	92	3	90	45	9	3	41	1.54
954481--954568	44	2.0	44	95	0	158	48	7	6	36	1.59
957188--957300	40	2.8	39	77	9	111	28	18	29	23	1.98
957056--957340	135	2.2	129	84	5	358	29	18	27	24	1.98
957377--957412	14	2.6	14	90	0	54	13	8	52	25	1.68
957582--957738	66	2.4	65	80	3	172	45	14	12	26	1.81
958394--958455	24	2.5	24	89	2	97	19	20	27	32	1.97
958995--959098	44	2.5	40	80	14	122	3	17	4	74	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
961163--961384	63	3.6	63	83	7	267	43	14	18	22	1.87
961163--961384	122	1.8	122	84	3	304	43	14	18	22	1.87
961366--961404	20	2.0	20	89	0	60	48	15	17	17	1.81
963772--963895	31	3.9	32	81	7	128	30	19	19	30	1.96
968970--969093	31	3.9	32	81	7	128	30	19	19	30	1.96
969691--969847	64	2.5	64	77	12	153	27	19	20	33	1.96
974040--974102	29	2.2	29	82	0	81	17	15	9	57	1.65
974049--974129	29	2.8	29	79	7	85	18	13	8	59	1.59
977036--977280	120	2.1	117	87	7	343	48	4	4	42	1.42
977212--977251	17	2.2	20	86	13	59	52	0	0	47	1.00
983728--983824	36	3.0	31	70	24	90	21	16	22	39	1.92
984554--984582	15	2.0	15	93	6	51	41	0	0	58	0.98
986757--986839	30	2.8	30	94	0	148	61	4	13	20	1.50
987232--987328	23	4.2	23	97	0	176	32	17	36	13	1.89
988516--988766	131	1.9	131	85	1	351	26	17	30	26	1.97
988770--988964	66	2.9	66	81	4	214	40	15	20	23	1.91
989099--989170	36	2.0	37	91	2	119	36	11	22	30	1.89
992480--992523	23	1.9	23	85	0	61	34	6	25	34	1.82
993703--993746	23	1.9	23	85	0	61	34	6	25	34	1.82
995249--995289	20	2.0	20	90	0	64	34	24	7	34	1.83
1005476--1005617	30	4.8	30	87	1	196	61	5	13	19	1.51
1005477--1005621	59	2.4	60	86	1	220	62	6	13	17	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1007141--1007177	3	12.3	3	88	11	58	67	0	0	32	0.91
1007137--1007178	9	4.5	10	91	8	54	66	0	0	33	0.92
1007732--1007806	21	3.5	20	73	21	64	38	1	5	54	1.31
1012867--1012962	31	3.1	31	81	3	113	33	21	18	26	1.97
1013827--1013881	20	2.8	20	97	0	101	25	25	20	29	1.99
1017586--1017631	12	4.0	12	75	11	51	41	17	19	21	1.90
1017587--1017631	22	2.0	23	91	8	74	40	17	20	22	1.92
1018359--1018453	31	3.1	31	84	0	136	34	22	17	25	1.96
1019341--1019415	20	3.8	20	94	0	132	25	24	20	30	1.98
1021730--1021811	18	4.7	18	84	4	96	35	6	26	31	1.81
1021730--1021811	35	2.3	35	85	0	110	35	6	26	31	1.81
1022337--1022420	33	2.6	33	92	1	143	39	38	10	11	1.77
1025454--1025792	169	2.0	170	94	0	599	35	16	14	33	1.89
1025805--1025848	18	2.7	16	83	13	54	54	6	15	22	1.65
1027251--1027303	23	2.3	23	81	15	65	50	5	0	43	1.25
1027466--1027495	15	2.0	15	93	0	51	26	16	0	56	1.40
1030636--1030675	21	1.9	21	89	0	62	55	7	7	30	1.56
1036239--1036291	29	1.9	28	85	11	74	22	9	16	50	1.74
1036675--1036720	21	2.2	21	88	0	65	26	23	19	30	1.98
1036682--1036721	21	1.9	21	100	0	80	25	20	22	32	1.98
1036734--1036869	64	2.1	65	84	4	177	29	22	17	30	1.97
1040858--1040916	22	2.7	22	89	0	91	27	25	16	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1041601--1041629	15	1.9	15	100	0	58	20	17	27	34	1.95
1042239--1042271	2	16.5	2	100	0	66	48	0	0	51	1.00
1046316--1046392	23	3.5	22	72	13	79	22	23	27	27	1.99
1046339--1046414	19	3.8	19	68	19	55	26	22	27	23	1.99
1046316--1046407	42	2.2	42	90	0	148	22	22	28	26	1.99
1046452--1046480	15	1.9	15	100	0	58	27	17	20	34	1.95
1047861--1047911	24	2.2	23	82	3	57	45	9	7	37	1.67
1053897--1053937	21	2.0	21	85	0	55	19	0	34	46	1.50
1054074--1054210	7	18.9	7	65	19	50	26	3	27	43	1.71
1054075--1054122	14	3.4	14	85	5	60	27	0	22	50	1.50

Tables:   1   2   3   4   5   6   7