genome.fa.s8314.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008314.1 Hibiscus syriacus cultivar Beakdansim tig00111008_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2414839

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  2  of  10  ( 1196 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259908--259970	23	2.7	23	85	4	83	20	25	26	26	1.99
260909--260954	23	1.9	24	83	16	60	41	2	8	47	1.46
261943--262333	84	4.8	84	81	7	446	32	15	18	34	1.91
263860--263900	22	1.9	21	90	5	64	70	4	0	24	1.06
264593--264626	18	1.9	18	88	5	52	14	26	29	29	1.95
265546--265601	26	2.2	26	100	0	112	19	17	14	48	1.81
266800--266862	26	2.4	26	100	0	126	25	34	19	20	1.96
266826--266904	35	2.3	35	100	0	158	26	34	20	18	1.96
266989--267044	26	2.2	26	100	0	112	19	37	25	17	1.94
267067--267144	29	2.7	29	92	4	122	15	30	32	21	1.94
267147--267178	13	2.5	13	94	0	55	18	46	3	31	1.65
267332--267383	25	2.1	25	92	0	86	28	9	32	28	1.89
267446--267498	21	2.5	21	96	0	97	62	0	35	1	1.06
267444--267475	17	1.9	16	93	6	55	62	0	37	0	0.95
267701--267790	43	2.0	46	89	6	141	41	0	12	46	1.41
270142--270174	17	1.9	17	93	0	57	45	12	6	36	1.66
270159--270227	22	3.0	22	73	19	77	47	7	4	40	1.51
270379--270667	12	21.3	13	70	22	145	43	9	2	43	1.50
270424--270456	8	4.2	8	84	7	50	51	12	0	36	1.39
270444--270712	11	22.1	11	67	24	84	43	10	2	44	1.50
270453--270667	26	8.6	26	77	13	209	42	9	2	45	1.50
270485--270686	97	2.1	94	81	11	232	44	10	2	42	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270379--270725	124	2.8	123	96	1	644	44	9	2	43	1.50
273539--273597	26	2.3	24	78	16	64	40	3	8	47	1.51
274393--274467	25	3.2	25	88	7	104	54	13	0	32	1.39
274399--274472	21	3.3	21	83	9	76	54	14	0	31	1.41
274923--274967	20	2.3	20	92	3	74	17	53	6	22	1.67
274929--274969	20	2.0	20	100	0	82	14	56	4	24	1.58
274957--275037	16	5.1	16	69	16	69	17	53	7	22	1.68
274950--275050	30	3.1	35	79	16	142	16	49	8	24	1.74
274993--275037	14	3.1	14	75	12	54	17	55	6	20	1.64
275083--275229	29	5.1	29	99	0	285	17	36	31	14	1.90
276075--276112	20	1.9	19	89	5	58	18	15	21	44	1.86
277603--277648	20	2.2	21	92	3	76	21	36	30	10	1.88
280953--280998	18	2.6	18	80	13	67	32	6	4	56	1.45
292441--292504	28	2.4	26	80	10	74	39	1	1	57	1.17
292539--292627	43	2.1	42	80	15	105	56	0	4	39	1.20
292608--292675	24	2.8	24	78	13	68	50	0	2	47	1.16
299713--299827	23	5.0	23	80	0	140	31	25	25	18	1.97
299713--299827	46	2.5	46	94	0	194	31	25	25	18	1.97
301246--301290	21	2.1	21	87	0	63	15	24	28	31	1.96
301296--301336	23	1.9	22	85	14	59	31	19	7	41	1.79
304700--304732	16	2.0	17	88	5	50	18	3	36	42	1.66
308932--308974	17	2.6	16	78	7	50	39	25	0	34	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311609--311746	23	6.0	23	77	3	116	31	21	25	21	1.98
330693--330732	20	2.1	19	85	4	53	65	2	2	30	1.19
331458--331504	19	2.4	18	77	22	51	36	0	2	61	1.08
340473--340611	67	2.1	67	98	0	269	28	18	11	41	1.86
343565--343612	16	3.0	16	84	6	62	31	18	6	43	1.75
343609--343638	2	15.0	2	92	0	51	46	0	0	53	1.00
344489--344522	2	17.0	2	100	0	68	50	0	0	50	1.00
344597--344659	20	3.2	20	84	8	67	41	6	23	28	1.79
344962--345000	19	2.1	19	100	0	78	46	15	20	17	1.84
347114--347251	69	2.0	69	100	0	276	36	10	21	31	1.87
347539--347578	2	20.0	2	94	0	71	47	0	2	50	1.14
347893--347963	18	4.1	18	70	12	58	33	9	14	42	1.78
362833--362863	2	15.5	2	100	0	62	51	0	0	48	1.00
362923--362951	2	14.5	2	100	0	58	48	0	0	51	1.00
363413--363439	2	13.5	2	100	0	54	51	0	0	48	1.00
364011--364562	182	3.0	182	99	0	1086	30	19	13	35	1.91
366167--366194	13	2.2	13	100	0	56	21	14	7	57	1.61
377333--377522	95	2.0	95	95	0	344	45	10	17	26	1.80
377795--377833	17	2.4	17	95	4	71	38	0	0	61	0.96
377855--377899	17	2.6	17	75	0	54	42	0	0	57	0.98
380781--380863	38	2.2	38	93	2	141	60	10	4	24	1.49
380779--380860	19	4.3	18	83	14	103	60	10	4	23	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381250--381299	21	2.4	21	100	0	100	38	0	4	58	1.17
383668--383706	19	2.1	19	85	9	53	38	0	10	51	1.36
385105--385197	21	4.5	21	78	4	100	39	18	24	17	1.91
385186--385280	20	4.7	20	78	7	84	34	25	16	23	1.95
385105--385197	41	2.3	41	100	0	186	39	18	24	17	1.91
385183--385260	41	1.9	41	83	0	102	39	23	15	21	1.91
385468--385511	22	2.0	22	95	0	79	20	45	15	18	1.85
385755--385798	20	2.2	20	87	0	61	11	18	20	50	1.77
385935--385989	25	2.2	24	78	15	58	20	9	18	52	1.71
387117--387161	18	2.5	18	88	0	72	26	44	15	13	1.83
387643--387688	20	2.3	20	84	0	56	36	23	21	17	1.94
387654--387698	20	2.3	20	88	3	74	37	17	24	20	1.93
387662--387777	19	6.6	19	69	21	83	43	20	21	14	1.88
387698--387755	14	3.9	14	75	16	62	48	22	17	12	1.80
387682--387772	32	2.8	33	91	3	157	47	20	18	13	1.82
387784--387894	32	3.4	32	94	1	186	9	17	24	48	1.77
387784--387936	14	8.9	18	69	19	96	10	18	24	46	1.80
387879--387934	20	2.8	20	84	7	62	14	23	25	37	1.92
389952--390019	19	3.8	19	85	14	101	47	17	22	13	1.82
390038--390095	20	2.9	20	94	0	107	15	20	25	37	1.92
391151--391204	24	2.2	24	90	0	81	24	16	20	38	1.92
391377--391401	12	2.1	12	100	0	50	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393409--393467	19	3.4	19	73	22	74	45	18	22	13	1.84
397036--397096	20	3.1	19	79	9	68	44	18	24	13	1.85
399353--399388	17	2.1	18	89	5	56	33	11	11	44	1.75
402741--403015	63	4.4	63	97	0	505	19	41	7	31	1.79
409118--409149	3	10.7	3	93	0	55	65	3	0	31	1.08
412387--412483	38	2.6	38	81	4	117	46	12	8	32	1.71
412848--412890	18	2.5	17	85	7	61	25	4	2	67	1.22
412847--412962	62	2.0	59	81	13	141	31	3	1	62	1.21
417465--417872	192	2.1	191	93	1	683	29	18	19	31	1.96
418972--419075	36	2.9	36	70	1	91	28	18	15	37	1.91
418933--419075	72	2.0	73	84	6	193	28	18	12	40	1.87
419200--419278	39	2.0	39	85	4	106	30	21	10	37	1.86
419177--419494	104	3.1	103	90	2	480	30	20	11	37	1.88
419394--419469	36	2.1	36	87	0	107	21	21	15	42	1.89
419669--420299	105	6.0	105	90	2	930	33	26	18	21	1.96
421304--421405	52	2.0	52	84	11	138	36	1	1	59	1.20
421390--421420	2	15.5	2	100	0	62	48	0	0	51	1.00
421323--421437	60	1.9	60	87	3	169	37	2	0	59	1.18
421601--421656	21	2.6	20	75	13	58	23	1	1	73	1.03
421613--421658	24	1.9	24	86	8	67	19	2	2	76	1.00
424381--424515	36	3.8	36	93	0	234	43	17	14	25	1.86
431803--431850	15	3.2	15	93	0	78	8	16	66	8	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432836--432874	17	2.3	17	100	0	78	48	33	0	17	1.48
435967--435993	13	2.1	13	100	0	54	55	0	7	37	1.28
436516--436589	27	2.7	27	83	8	105	36	5	20	37	1.76
437879--437920	20	2.1	20	95	0	75	54	4	26	14	1.59
440938--440970	2	16.5	2	100	0	66	48	0	0	51	1.00
443215--443265	26	2.0	26	88	0	75	39	7	7	45	1.62
443217--443272	26	2.2	26	83	0	67	42	7	7	42	1.59
444139--444209	21	3.5	21	90	3	101	45	15	19	19	1.86
444214--444251	20	1.9	20	88	0	58	39	7	21	31	1.82
444345--444396	21	2.5	20	81	9	61	36	15	15	32	1.89

Tables:   1   2   3   4   5   6   7   8   9   10