genome.fa.s8314.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008314.1 Hibiscus syriacus cultivar Beakdansim tig00111008_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2414839

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  5  of  10  ( 1196 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
843842--843976	19	7.6	19	76	16	128	45	23	19	11	1.82
843972--844100	19	7.3	19	73	17	116	8	16	28	46	1.76
843972--844063	33	2.8	33	91	3	141	7	17	28	46	1.75
844132--844504	93	4.0	93	98	0	723	46	19	12	21	1.83
846210--846299	14	5.7	14	72	23	72	42	22	25	10	1.84
846202--846316	33	3.5	33	92	0	203	45	20	24	10	1.82
846209--846321	19	6.8	18	70	23	79	43	21	24	10	1.84
846333--846387	14	3.6	14	73	21	56	9	25	23	41	1.83
846317--846387	33	2.2	33	94	0	124	8	22	25	43	1.81
846328--846409	33	2.5	33	89	2	119	9	25	21	42	1.84
846340--846428	20	4.8	20	72	19	75	12	24	19	43	1.85
846508--846578	33	2.2	33	92	0	115	47	18	22	11	1.80
846759--846813	22	2.5	22	81	0	74	20	16	40	23	1.91
846959--847151	20	9.6	20	81	5	210	19	19	25	35	1.96
846961--847132	60	2.8	60	85	0	254	20	19	25	34	1.96
847207--847258	20	2.6	20	96	0	95	21	13	26	38	1.90
849175--849203	12	2.4	12	100	0	58	13	62	10	13	1.55
854287--854312	2	13.0	2	100	0	52	50	0	0	50	1.00
854742--854786	3	15.0	3	100	0	90	66	0	0	33	0.92
855088--855210	39	3.2	38	82	13	135	19	60	4	16	1.51
859372--860475	210	5.3	211	83	5	1104	33	20	16	30	1.95
859346--860479	421	2.7	419	79	7	1119	33	20	16	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
861599--861661	21	2.8	22	79	13	67	42	0	3	53	1.16
864088--864164	18	4.0	20	68	20	56	63	0	1	35	1.03
864162--864232	23	2.8	26	85	12	96	53	1	0	45	1.09
864158--864239	12	6.7	12	75	15	78	57	1	0	41	1.06
864619--864675	29	2.0	29	100	0	114	38	7	8	45	1.62
868619--868668	21	2.4	21	96	0	91	36	4	18	42	1.69
869354--869388	17	2.1	17	94	0	61	31	25	8	34	1.86
869622--869839	23	9.5	23	82	2	215	22	27	1	48	1.61
869624--869831	114	1.8	115	85	1	292	23	26	1	48	1.62
869826--869918	48	2.0	47	82	6	116	37	11	16	34	1.85
872273--872312	16	2.5	16	95	0	71	35	22	15	27	1.94
873271--873387	7	16.7	7	75	0	72	46	29	0	23	1.58
873284--873384	28	3.6	29	75	9	86	48	27	0	22	1.57
874738--874799	11	5.5	11	77	7	52	32	14	22	30	1.94
874738--874801	23	2.8	23	87	0	92	31	14	21	32	1.93
877415--877469	24	2.3	25	78	12	62	61	5	3	29	1.35
877415--877470	23	2.3	24	77	14	62	62	5	3	28	1.34
881391--881469	19	4.1	20	76	14	85	40	0	0	59	0.97
881394--881470	38	2.0	39	87	12	115	38	0	0	61	0.96
887056--887082	4	6.8	4	100	0	54	74	0	25	0	0.83
890340--890466	43	3.0	43	89	1	202	48	6	7	37	1.58
898665--898712	23	2.1	23	88	0	69	37	8	16	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
899377--899803	182	2.4	183	86	6	622	29	13	12	45	1.80
899822--899871	20	2.5	20	80	0	64	14	12	12	62	1.56
899662--900359	112	6.3	112	91	0	1071	26	14	12	46	1.81
903241--903277	3	12.7	3	88	5	58	64	0	0	35	0.94
904375--904418	20	2.2	20	88	8	63	70	0	0	29	0.88
904641--905244	84	7.2	83	78	7	598	23	21	25	29	1.99
904652--905260	165	3.7	165	89	2	805	23	21	25	29	1.99
904652--905232	249	2.3	249	82	5	681	24	21	25	29	1.99
905332--906393	106	10.0	106	92	0	1689	23	17	24	34	1.96
911338--911394	23	2.5	23	82	5	80	73	0	0	26	0.83
911356--911399	20	2.2	20	88	8	63	70	0	0	29	0.88
912493--912532	17	2.3	17	87	12	55	62	0	0	37	0.95
921979--922026	24	2.0	24	87	0	69	47	6	16	29	1.71
927969--928048	35	2.3	35	81	12	94	53	10	8	27	1.63
929781--929901	48	2.6	45	79	8	134	30	19	7	42	1.79
929786--929901	46	2.5	48	83	5	139	31	19	7	41	1.80
937055--937095	15	2.8	15	88	3	57	41	24	7	26	1.81
938899--938955	23	2.5	23	80	5	62	38	0	1	59	1.08
941158--941215	27	2.2	26	81	6	73	62	1	5	31	1.27
941229--941281	20	2.7	20	88	5	72	13	1	9	75	1.12
941229--941281	10	5.3	10	80	8	63	13	1	9	75	1.12
941286--941319	16	2.1	16	89	10	52	55	0	2	41	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
946931--946964	4	8.0	4	87	12	50	70	2	0	26	1.01
950110--950164	18	3.1	18	72	0	56	47	0	0	52	1.00
951351--951449	10	10.3	9	75	12	72	17	27	26	29	1.97
951352--951449	19	5.1	19	76	14	69	16	27	26	29	1.97
951350--951449	29	3.4	30	81	9	109	18	27	26	29	1.98
951445--951483	17	2.3	17	100	0	78	17	46	23	12	1.83
958647--958705	20	2.9	21	85	7	86	18	27	23	30	1.98
958668--958737	10	7.3	10	69	24	53	15	28	28	27	1.96
958648--958712	30	2.2	29	86	13	89	16	27	26	29	1.97
958668--958735	19	3.5	20	86	9	81	16	26	29	27	1.97
958733--958771	17	2.3	17	100	0	78	17	46	23	12	1.83
958761--958791	7	4.4	7	95	0	53	19	29	25	25	1.99
965992--966046	28	2.0	28	85	0	74	32	12	16	38	1.86
968334--968412	30	2.6	30	82	4	79	45	16	3	34	1.65
975624--975664	16	2.5	17	80	11	50	39	0	0	60	0.96
977441--977535	21	4.6	19	72	14	73	20	17	24	37	1.93
977441--977535	41	2.3	41	90	5	147	20	17	24	37	1.93
977611--977643	6	5.5	6	96	0	57	30	54	15	0	1.41
978627--978652	13	2.0	13	100	0	52	38	23	7	30	1.83
978643--978708	19	3.3	19	70	12	60	42	19	18	19	1.90
978658--978729	22	3.4	22	73	11	87	38	23	18	19	1.93
978643--978729	41	2.1	41	93	0	156	40	21	18	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
978741--978794	21	2.6	21	90	0	90	29	24	16	29	1.97
978718--978802	21	4.1	21	76	3	64	35	23	17	23	1.95
978820--978872	19	2.8	19	94	0	88	33	16	26	22	1.96
979117--979271	12	14.2	10	82	17	81	30	0	0	69	0.89
979085--979906	7	125.3	7	93	6	1200	30	0	0	69	0.88
991379--991403	11	2.3	11	100	0	50	32	24	0	44	1.54
994225--994276	20	2.6	20	87	0	68	30	19	3	46	1.68
1010253--1010369	44	2.7	43	80	7	132	33	19	18	28	1.96
1011427--1011585	64	2.5	64	84	4	187	34	20	17	27	1.95
1012240--1012426	31	6.0	31	96	1	340	19	19	22	38	1.93
1015938--1016096	64	2.5	64	83	4	187	33	19	18	28	1.95
1016751--1016891	31	4.5	31	93	0	237	19	17	21	41	1.91
1017661--1017712	21	2.5	21	87	6	70	0	34	17	48	1.48
1019773--1020073	82	3.7	81	77	7	270	35	18	13	32	1.90
1026949--1026978	2	15.0	2	100	0	60	50	0	0	50	1.00
1026968--1027204	125	2.0	122	85	8	333	46	8	11	33	1.69
1028865--1028925	22	2.7	22	82	5	59	18	16	31	34	1.93
1028945--1028973	13	2.2	13	100	0	58	58	0	0	41	0.98
1029917--1029992	21	3.7	20	82	5	71	1	32	18	47	1.57
1032367--1032655	82	3.5	82	76	10	268	34	18	13	32	1.90
1032347--1032655	164	1.9	166	83	6	405	34	18	13	32	1.90
1033650--1033696	22	2.1	22	96	0	85	31	14	8	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1042804--1042832	13	2.2	13	100	0	58	58	0	0	41	0.98
1043800--1043845	21	2.1	22	84	4	58	0	34	17	47	1.48
1051763--1051888	47	2.8	45	85	5	164	29	23	7	39	1.83
1054806--1055161	83	4.3	80	80	6	351	32	19	16	31	1.94
1056764--1056909	41	3.6	41	69	15	113	29	20	17	32	1.96
1060510--1060569	22	2.6	23	81	5	68	16	16	31	35	1.92
1060589--1060617	13	2.2	13	100	0	58	58	0	0	41	0.98
1061561--1061636	21	3.7	20	82	5	80	1	31	19	47	1.58
1070902--1070954	2	26.5	2	100	0	106	49	0	0	50	1.00
1072933--1072995	31	2.0	31	90	0	99	30	9	6	53	1.58

Tables:   1   2   3   4   5   6   7   8   9   10