genome.fa.s8339.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008339.1 Hibiscus syriacus cultivar Beakdansim tig00111061_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1048908

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 733 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172285--172348	24	2.7	23	83	11	76	64	3	3	29	1.24
172669--172744	40	1.9	39	83	2	98	22	19	38	19	1.94
172536--172890	134	2.6	134	87	2	471	24	18	31	24	1.97
172898--172993	28	3.3	28	83	12	106	44	13	15	26	1.83
173376--173639	62	4.3	62	69	12	159	41	14	14	30	1.85
173194--173765	285	2.0	287	98	0	1103	40	13	14	31	1.84
173875--173954	40	2.0	40	100	0	160	35	12	22	30	1.91
173936--174061	65	2.0	64	87	1	180	42	10	14	32	1.79
173958--174182	120	1.9	121	80	7	271	42	12	14	31	1.82
174336--174541	30	6.4	31	69	23	108	42	13	11	32	1.80
174283--174516	67	3.5	67	96	2	420	44	12	12	30	1.80
174366--174486	37	3.5	37	69	23	125	42	10	13	33	1.78
174521--174623	52	2.0	53	94	1	181	36	16	13	33	1.88
174620--174801	27	6.4	29	85	5	169	46	15	9	28	1.78
174615--174734	29	4.1	30	85	3	93	44	14	8	33	1.75
174662--174790	27	4.6	27	94	1	186	44	15	10	28	1.80
174634--174798	29	5.8	29	86	5	187	44	16	10	29	1.80
174634--174790	54	2.8	56	85	5	194	43	15	10	29	1.80
175041--175159	36	3.4	36	78	6	102	36	12	20	30	1.90
175075--175171	36	2.7	36	82	3	97	34	11	19	35	1.88
175111--175343	105	2.2	104	85	6	296	37	12	19	31	1.88
177012--177049	11	3.4	11	89	7	58	5	13	10	71	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177007--177054	12	3.9	12	81	8	53	4	12	12	70	1.29
177037--177074	20	1.9	20	88	0	58	2	15	10	71	1.25
180756--180792	16	2.3	16	95	0	65	37	27	13	21	1.91
180992--181019	4	7.0	4	100	0	56	75	0	0	25	0.81
182261--182293	16	2.1	16	100	0	66	0	18	12	69	1.18
182768--182829	3	20.7	3	74	12	56	62	3	3	30	1.26
182768--182831	24	2.7	23	83	11	76	64	3	3	29	1.24
190913--190968	23	2.5	23	80	13	71	37	8	21	32	1.84
207892--207938	21	2.2	21	100	0	94	48	8	19	23	1.75
210525--210573	17	2.9	17	90	0	80	8	22	46	22	1.77
210575--210653	19	4.2	18	76	13	70	27	27	30	13	1.95
210600--210675	29	2.5	31	83	8	104	30	25	26	18	1.98
217835--217883	17	2.9	17	100	0	98	8	24	48	18	1.75
217824--217885	17	3.0	22	75	22	80	9	24	48	17	1.77
217886--217960	9	7.7	10	75	11	59	30	25	25	18	1.98
217886--217959	29	2.5	29	86	6	96	31	25	25	17	1.97
224966--225009	17	2.8	16	86	10	63	54	2	0	43	1.12
228263--228323	23	2.7	23	89	0	95	26	27	26	19	1.99
228339--228556	103	2.1	103	99	0	427	36	22	13	26	1.92
233321--233381	23	2.7	23	92	0	104	27	27	24	19	1.99
233397--233614	103	2.1	103	95	0	391	38	22	12	26	1.90
235272--235324	23	2.3	23	80	0	61	28	22	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235340--235557	103	2.1	103	97	0	418	36	23	13	26	1.92
245650--245697	25	1.9	25	91	0	78	56	2	4	37	1.30
249049--249094	17	2.9	16	81	15	51	69	0	8	21	1.15
249727--249783	22	2.5	23	81	15	66	59	7	5	28	1.45
259243--259489	130	1.9	131	89	2	392	35	14	13	36	1.85
259257--259519	130	2.0	127	79	6	278	38	12	13	34	1.83
260091--260130	20	2.0	20	100	0	80	40	0	15	45	1.46
260102--260181	34	2.4	34	85	4	99	36	1	21	41	1.61
260314--260371	29	2.0	29	86	6	82	27	8	29	34	1.87
264619--264826	114	1.8	115	88	1	319	45	8	9	36	1.67
266226--266261	3	12.3	3	88	5	56	66	2	0	30	1.06
266227--266261	17	2.1	17	94	0	61	65	2	0	31	1.07
266386--267099	76	9.4	76	96	0	1302	35	21	19	23	1.96
267777--267853	22	3.5	22	94	0	136	40	14	10	35	1.80
277507--277575	30	2.2	32	85	14	92	59	1	4	34	1.26
279775--279809	3	12.0	3	93	6	63	65	0	0	34	0.93
283415--283494	30	2.6	31	82	2	90	15	12	7	65	1.47
285773--285820	20	2.4	20	100	0	96	45	29	6	18	1.74
286397--286458	30	2.1	30	100	0	124	43	12	17	25	1.85
287650--287702	22	2.4	22	96	0	97	18	18	26	35	1.95
288337--288381	6	7.5	6	100	0	90	0	15	51	33	1.44
288480--288552	21	3.4	21	94	1	119	34	28	16	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288587--288717	20	6.4	20	71	3	118	38	22	22	16	1.93
288628--288759	21	6.4	21	76	5	135	34	25	18	21	1.96
288612--288738	41	3.1	41	95	0	227	37	23	19	18	1.94
288544--288676	61	2.2	60	86	1	194	40	19	21	18	1.91
290595--290701	21	5.3	20	71	17	62	47	0	1	49	1.18
290638--290707	23	3.2	22	80	15	74	47	0	1	51	1.09
290668--290718	23	2.2	23	89	6	77	45	0	3	50	1.20
291200--291229	16	1.9	15	93	6	51	53	6	6	33	1.53
291240--291317	16	5.0	16	70	17	58	42	1	0	56	1.07
291234--291281	17	2.8	16	81	15	51	39	2	0	58	1.10
291555--291591	7	5.1	7	93	3	56	2	54	0	43	1.14
291912--292000	30	3.0	30	80	3	99	11	61	6	20	1.51
291988--292060	30	2.4	30	83	0	83	15	60	8	16	1.58
291942--292045	45	2.3	45	79	0	118	12	60	6	20	1.54
294655--294940	54	5.3	54	89	4	416	30	19	18	31	1.96
294655--294938	107	2.6	107	90	1	433	30	19	19	30	1.96
294831--294913	27	3.1	26	65	19	71	34	15	18	31	1.92
295349--295401	20	2.7	20	84	0	70	22	26	15	35	1.93
296529--296684	65	2.4	64	84	3	197	30	18	22	28	1.97
303102--303141	20	2.0	21	85	5	55	25	17	10	47	1.78
303484--303567	43	2.0	43	100	0	168	19	16	13	51	1.77
305304--305348	19	2.4	19	96	0	81	15	22	28	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305387--305433	19	2.5	19	89	6	69	23	21	27	27	1.99
305280--305449	84	2.0	83	86	5	236	28	18	22	30	1.98
308678--308706	14	2.0	15	93	6	51	20	3	0	75	0.94
309506--309558	14	3.8	14	80	7	54	30	5	3	60	1.37
309516--309554	15	2.7	14	88	4	51	30	2	5	61	1.31
322319--322381	21	2.9	22	71	2	65	30	30	23	15	1.96
323929--323964	18	1.9	19	94	5	65	44	25	30	0	1.54
324263--324294	16	2.0	16	100	0	64	31	12	6	50	1.65
325435--325489	23	2.3	25	84	12	71	58	0	0	41	0.98
333630--334617	492	2.0	495	98	0	1937	35	15	11	37	1.84
337921--337962	13	3.4	12	83	12	50	30	19	14	35	1.91
337940--337969	13	2.3	13	94	0	51	23	23	16	36	1.94
341936--342093	21	7.8	20	72	7	86	38	25	17	18	1.92
342060--342289	20	11.5	20	85	1	237	37	24	18	19	1.94
342971--343017	24	2.0	24	87	8	69	25	14	21	38	1.92
343192--343216	12	2.1	12	100	0	50	72	0	28	0	0.86
345547--345644	19	5.4	19	84	13	143	14	22	17	45	1.84
345528--345644	53	2.2	53	98	1	227	13	23	17	44	1.85
345721--345775	14	3.6	14	73	21	56	45	21	23	9	1.80
345703--345794	33	2.8	33	94	1	166	44	19	23	11	1.84
345703--345851	19	8.6	19	73	21	130	43	18	22	14	1.87
345735--345851	52	2.2	52	93	0	198	44	18	21	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345858--345976	19	6.5	19	85	10	176	15	23	16	44	1.86
345841--345958	33	3.4	33	82	13	155	14	25	16	43	1.86
345841--345976	72	1.9	71	93	1	236	14	25	16	43	1.86
346083--346118	13	2.6	14	82	8	56	44	22	0	33	1.53
348009--348143	19	7.6	18	75	18	97	46	24	18	10	1.80
348046--348138	33	2.8	33	90	0	159	48	22	19	9	1.78
348065--348121	14	3.7	14	75	20	60	47	24	19	8	1.77
348009--348143	52	2.5	54	79	18	158	46	24	18	10	1.80
348139--348267	19	7.3	19	75	17	125	8	17	28	45	1.77
348139--348230	33	2.8	33	93	3	150	7	18	28	45	1.76

Tables:   1   2   3   4   5   6   7