genome.fa.s8339.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008339.1 Hibiscus syriacus cultivar Beakdansim tig00111061_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1048908

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 733 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348311--348784	93	5.1	93	99	0	930	45	18	12	22	1.83
350491--350580	14	5.7	14	72	23	72	43	23	24	8	1.82
350483--350597	33	3.5	33	92	4	205	46	20	23	9	1.80
350538--350602	19	3.7	19	74	19	77	44	21	23	10	1.83
350614--350667	14	3.5	14	73	22	54	7	25	24	42	1.80
350598--350678	33	2.5	33	93	0	135	7	23	22	46	1.76
350654--350731	41	1.9	41	94	0	138	11	26	16	44	1.82
350655--350730	21	3.7	21	82	3	100	10	26	17	46	1.80
350810--350879	32	2.2	33	86	2	97	47	17	24	11	1.80
351236--351317	40	2.1	40	81	6	96	23	15	23	37	1.93
351259--351451	20	9.6	20	84	3	228	18	20	25	35	1.95
351438--351520	21	4.0	21	73	6	78	25	16	24	33	1.96
351418--351516	42	2.4	43	77	11	100	21	18	23	37	1.94
357456--357486	15	2.1	15	100	0	62	51	0	0	48	1.00
359424--359520	37	2.6	37	83	0	131	40	12	11	36	1.79
360077--360122	24	2.0	23	91	4	74	28	4	0	67	1.10
360218--360246	14	2.0	15	93	6	51	27	0	3	68	1.05
360349--360394	20	2.3	20	81	7	58	28	6	0	65	1.17
360445--360485	2	20.5	2	100	0	82	48	0	0	51	1.00
360783--360807	13	1.9	13	100	0	50	16	0	4	80	0.87
364427--364496	22	3.2	22	95	0	131	37	25	14	22	1.92
365300--366673	106	13.0	106	90	2	2000	34	24	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365299--366673	634	2.2	630	89	3	2109	34	25	17	22	1.96
367402--367507	37	2.9	37	81	0	131	42	13	13	31	1.82
368065--368168	24	4.3	24	71	20	90	28	4	0	65	1.19
368184--368228	11	4.2	11	86	10	58	20	6	4	68	1.29
368061--368231	15	11.0	15	65	25	63	25	6	1	66	1.25
368733--368807	22	3.4	22	75	15	66	16	2	5	76	1.09
379229--379500	135	2.0	135	97	0	508	35	26	14	23	1.93
385606--386096	250	2.0	250	87	4	722	50	7	14	26	1.70
386245--386278	15	2.3	15	89	0	50	41	8	17	32	1.80
391868--391939	35	2.1	35	94	0	126	33	37	1	27	1.66
393114--393176	23	2.6	24	78	19	60	50	1	0	47	1.10
393160--393261	51	2.0	51	83	14	131	49	1	0	48	1.19
393185--393229	21	2.1	21	84	8	56	53	0	2	44	1.13
393294--393347	27	2.0	28	85	10	76	46	0	1	51	1.11
393503--393553	20	2.5	20	87	12	77	58	0	0	41	0.98
398436--398672	126	1.9	126	88	0	357	35	15	19	28	1.93
406522--406684	36	4.6	36	92	0	256	20	25	21	33	1.97
408227--408288	27	2.4	26	78	7	65	38	4	9	46	1.58
409721--409766	20	2.2	22	77	14	53	50	8	17	23	1.74
413610--413656	20	2.4	20	89	3	69	25	6	25	42	1.78
413628--413784	19	8.2	19	80	7	149	29	12	22	36	1.90
413626--413780	58	2.7	58	88	4	208	30	12	22	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413628--413772	39	3.8	38	79	8	141	28	11	23	36	1.89
413801--414027	40	5.7	40	71	13	173	35	16	21	26	1.94
413788--414038	79	3.2	79	86	5	337	36	16	20	26	1.93
415669--415703	16	2.2	16	89	0	52	45	0	2	51	1.16
416219--416263	20	2.3	20	80	3	56	46	4	2	46	1.35
417565--417617	21	2.5	21	100	0	106	43	13	7	35	1.72
421219--421259	17	2.4	17	95	0	73	46	0	7	46	1.30
421229--421326	51	1.9	52	95	2	180	40	4	6	48	1.47
422454--422507	26	2.1	26	100	0	108	48	3	18	29	1.65
428124--428167	13	3.4	13	80	0	52	68	13	2	15	1.31
430390--430423	9	3.9	9	84	7	52	61	2	0	35	1.11
430386--430424	17	2.4	17	95	4	71	61	5	0	33	1.18
430470--430509	10	4.0	10	86	0	53	40	0	32	27	1.57
431414--431464	9	5.7	9	73	17	52	39	3	5	50	1.45
431414--431606	18	11.1	18	74	15	183	41	6	6	45	1.55
431411--431630	33	6.4	33	81	9	237	42	5	6	45	1.55
431625--431659	13	2.6	14	81	9	54	20	0	34	45	1.51
431692--431733	9	4.4	9	78	21	50	45	0	7	47	1.30
431665--431733	34	2.0	36	85	5	97	43	2	7	46	1.46
431692--431866	20	8.4	20	73	10	102	43	3	9	44	1.53
431716--431786	27	2.7	27	86	2	99	47	2	7	42	1.45
431777--431811	18	1.9	18	94	0	61	42	2	11	42	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431828--431892	33	2.0	32	85	5	87	36	6	10	46	1.64
431810--431939	18	6.9	18	73	19	90	40	7	10	42	1.67
431863--431946	42	2.0	42	92	0	141	40	10	9	39	1.73
431874--431958	42	2.0	42	90	4	136	41	10	8	40	1.70
431964--432009	18	2.6	17	79	3	56	41	6	8	43	1.61
431983--432049	33	2.1	32	91	2	107	50	4	5	38	1.47
432000--432073	20	3.5	20	76	16	76	51	2	6	39	1.43
432116--432218	9	11.3	9	67	20	54	49	4	0	44	1.30
432128--432260	26	5.3	24	70	20	87	47	3	2	46	1.33
432214--432424	20	10.1	20	66	17	99	41	6	6	45	1.54
432180--432261	11	7.8	10	70	22	53	47	2	2	47	1.28
432224--432261	11	3.5	11	88	0	58	44	2	2	50	1.30
432303--432363	27	2.2	28	88	2	88	39	4	8	47	1.55
432356--432414	22	2.8	20	79	18	59	47	6	1	44	1.39
432331--432430	42	2.5	41	87	11	136	44	6	3	47	1.43
432329--432440	20	5.6	20	69	18	81	42	5	3	48	1.43
432460--433071	217	2.8	221	89	5	897	29	12	7	50	1.67
436988--437148	65	2.5	65	83	8	177	33	1	7	57	1.38
437911--437962	15	3.4	14	76	12	50	25	9	0	65	1.23
437906--437958	22	2.5	21	79	8	63	24	11	0	64	1.26
438294--438339	23	2.0	23	95	0	83	36	10	0	52	1.37
439039--439084	5	9.4	5	97	2	85	0	41	21	36	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439085--439147	6	10.5	6	94	0	99	1	15	52	30	1.53
439282--439435	20	7.6	20	79	2	173	37	24	22	15	1.93
439279--439464	61	3.0	62	84	2	196	37	24	20	17	1.94
439302--439415	41	2.8	41	98	0	219	35	26	21	17	1.95
439603--439672	29	2.5	28	86	9	90	38	7	1	52	1.38
439603--439698	29	3.5	26	82	12	88	39	6	1	53	1.33
439653--439715	25	2.3	27	84	10	76	41	6	0	52	1.27
439777--439849	27	2.8	27	77	6	78	61	1	0	36	1.05
439778--439931	32	4.9	31	72	22	117	59	2	0	37	1.16
439811--439875	20	3.5	20	68	20	68	56	4	0	38	1.20
439766--439848	25	3.3	25	80	8	87	60	3	0	36	1.14
439807--439923	35	3.3	35	82	7	148	60	2	0	35	1.16
439871--439922	26	1.9	27	85	14	72	63	0	1	34	1.06
439842--440182	29	11.4	29	74	9	224	56	1	6	36	1.35
439880--440182	60	5.1	58	75	7	200	56	1	6	35	1.35
446332--446375	23	1.9	23	85	0	61	47	18	0	34	1.49
451333--451368	18	2.0	18	88	0	54	52	0	16	30	1.44
452487--452590	24	4.3	23	72	8	73	19	15	16	49	1.80
452501--452593	12	7.8	12	71	9	73	19	15	17	48	1.81
452504--452597	48	2.0	48	87	4	136	20	14	15	48	1.80
452501--452595	24	4.0	24	79	2	102	20	14	16	48	1.81
452761--452785	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456097--456137	20	2.0	20	95	0	73	43	19	7	29	1.78
456100--456144	20	2.2	20	88	0	63	46	20	6	26	1.75
460685--460786	51	2.0	51	100	0	204	17	21	29	31	1.96
461154--461208	2	27.5	2	100	0	110	49	0	0	50	1.00
461744--461828	21	4.0	21	84	3	100	30	35	11	22	1.90
462223--462301	25	3.4	25	64	25	73	20	5	6	68	1.31
462223--462390	91	1.9	88	91	3	273	20	4	7	67	1.33
462267--462394	24	5.5	24	65	16	81	20	3	7	68	1.28
462223--462390	44	3.8	44	88	4	255	20	4	7	67	1.33
462467--462498	16	2.0	16	100	0	64	31	25	18	25	1.98

Tables:   1   2   3   4   5   6   7