genome.fa.s8357.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008357.1 Hibiscus syriacus cultivar Beakdansim tig00111096_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1459476

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 750 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
992381--992499	32	3.8	31	85	10	161	41	16	9	32	1.80
993112--993144	2	17.0	2	93	6	59	48	0	0	51	1.00
993131--993219	39	2.2	39	88	7	126	44	2	4	48	1.35
993131--993238	39	2.8	37	80	13	105	42	2	5	49	1.40
1006045--1006080	18	2.0	18	89	10	56	38	5	11	44	1.63
1006244--1006516	144	1.9	144	85	0	375	23	14	25	36	1.93
1006244--1006503	48	5.4	48	88	0	331	22	15	25	36	1.93
1006623--1006710	30	2.9	31	80	9	94	51	5	18	25	1.68
1008635--1008714	40	2.0	40	85	0	106	21	27	23	27	1.99
1015245--1015275	10	3.1	10	95	0	53	38	12	9	38	1.77
1015358--1015402	22	2.0	22	87	8	65	40	4	17	37	1.70
1018317--1018574	96	2.7	96	81	2	284	24	12	26	36	1.91
1018308--1018574	144	1.9	143	81	4	331	23	12	26	37	1.90
1018317--1018574	48	5.4	48	79	8	238	24	12	26	36	1.91
1018676--1018767	30	3.1	30	81	6	107	47	6	19	26	1.73
1026740--1026833	27	3.5	27	100	0	188	68	0	10	21	1.20
1027072--1027138	31	2.2	31	88	0	98	32	8	20	37	1.84
1028446--1028489	23	1.9	23	95	0	79	29	31	6	31	1.84
1028448--1028500	23	2.3	23	86	3	70	35	28	5	30	1.80
1028833--1028891	29	2.2	26	76	21	68	25	11	8	54	1.65
1028989--1029051	23	3.0	20	71	15	63	26	4	15	52	1.63
1043072--1043121	12	4.4	12	76	19	54	32	0	2	66	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1043079--1043229	60	2.5	60	86	10	200	41	0	1	56	1.10
1043105--1043181	13	6.3	12	71	18	52	41	0	1	57	1.07
1043131--1043274	60	2.4	55	80	16	139	41	0	1	56	1.13
1043727--1043785	31	1.9	31	89	3	93	44	10	6	38	1.65
1047320--1047511	5	37.6	5	71	24	120	39	1	3	55	1.24
1047321--1047497	7	26.0	7	74	17	151	40	1	3	54	1.24
1047320--1047497	25	6.8	25	76	16	161	40	1	3	55	1.24
1050128--1050161	15	2.3	15	90	10	52	55	5	14	23	1.61
1050432--1050473	14	3.0	14	86	13	59	14	14	19	52	1.75
1051449--1051506	23	2.5	23	88	0	89	34	6	27	31	1.83
1051589--1051648	29	2.1	29	87	0	84	55	1	15	28	1.50
1053046--1053458	139	3.0	139	86	1	551	24	16	25	32	1.96
1053808--1054034	102	2.2	104	80	3	280	36	11	19	33	1.87
1056459--1056498	17	2.4	16	88	8	62	70	2	2	25	1.13
1056637--1056689	16	3.3	16	86	0	70	35	3	28	32	1.75
1060716--1060745	5	5.8	5	92	7	51	16	3	0	80	0.85
1060713--1060745	16	2.1	16	94	0	57	18	3	0	78	0.87
1062676--1062946	76	3.6	76	95	3	462	28	1	11	58	1.42
1063599--1063660	16	4.0	16	78	14	67	32	1	0	66	1.02
1065420--1065447	14	2.0	14	100	0	56	28	21	7	42	1.79
1068782--1068864	42	2.0	42	95	0	148	14	34	6	44	1.70
1068944--1068989	15	3.1	15	78	6	58	30	0	13	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1069338--1069362	13	1.9	13	100	0	50	64	24	0	12	1.27
1069447--1069485	20	2.0	20	89	0	60	33	0	7	58	1.26
1072760--1073754	490	2.0	493	94	1	1730	34	11	13	40	1.81
1076712--1076770	29	2.0	29	96	0	109	50	10	5	33	1.58
1081382--1081415	17	1.9	18	88	5	52	52	26	2	17	1.58
1088605--1088638	17	1.9	18	88	5	52	52	26	2	17	1.58
1092888--1092954	8	9.0	8	82	17	67	22	0	1	76	0.87
1092882--1092936	14	3.9	14	86	9	85	20	0	0	80	0.72
1092879--1092954	28	2.7	29	90	10	113	21	0	1	77	0.84
1092882--1092954	22	3.4	22	90	7	107	21	0	1	76	0.86
1092879--1092944	14	4.8	13	79	20	73	19	0	0	80	0.72
1093594--1093739	44	3.3	43	87	4	202	36	8	25	29	1.86
1100499--1100532	12	2.8	12	86	0	50	50	0	0	50	1.00
1100482--1100537	9	6.2	9	85	6	51	55	0	0	44	0.99
1100680--1103336	55	48.8	55	81	5	2450	23	24	19	31	1.98
1100680--1101381	106	6.5	110	83	3	639	22	25	19	31	1.98
1100680--1103336	165	16.3	164	82	4	2717	23	24	19	31	1.98
1104184--1104222	18	2.2	18	100	0	78	17	51	20	10	1.74
1106724--1106818	24	4.0	24	84	0	118	18	14	17	48	1.81
1106747--1106816	12	5.8	12	81	6	79	14	15	18	51	1.77
1106710--1106818	48	2.3	48	85	3	139	18	16	17	47	1.83
1108705--1108750	23	2.0	22	84	12	58	32	26	10	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1108934--1109003	18	4.2	18	71	17	69	21	48	17	12	1.80
1108992--1109025	7	4.7	7	88	3	50	17	29	26	26	1.98
1111536--1111605	12	5.8	12	78	6	70	15	14	18	51	1.77
1111513--1111607	24	4.0	24	83	0	109	20	13	17	48	1.81
1111516--1111607	48	1.9	48	86	0	130	19	14	17	48	1.80
1120610--1120643	3	11.0	3	93	6	59	64	0	0	35	0.94
1120815--1121996	55	21.9	55	81	5	1193	22	26	19	31	1.98
1120815--1121996	110	10.9	109	85	4	1316	22	26	19	31	1.98
1120815--1121996	165	7.3	164	83	4	1316	22	26	19	31	1.98
1121527--1121615	46	1.9	46	86	4	126	24	29	14	31	1.95
1144823--1144862	14	2.8	15	88	7	57	25	7	27	40	1.82
1144883--1144908	13	2.0	13	100	0	52	38	7	23	30	1.83
1145430--1145495	19	3.3	20	79	8	64	46	3	4	45	1.38
1145938--1146026	29	2.9	32	78	10	121	40	16	20	22	1.91
1146167--1146248	32	2.6	32	82	7	96	30	18	14	36	1.91
1146570--1146651	32	2.6	32	82	7	96	30	18	13	37	1.89
1146148--1146955	403	2.0	403	97	0	1526	31	25	15	26	1.96
1150336--1150382	18	2.6	19	80	10	53	61	6	8	23	1.48
1154931--1154978	6	7.5	6	86	9	60	79	0	4	16	0.89
1154931--1154978	13	3.8	12	81	13	60	79	0	4	16	0.89
1160481--1160527	18	2.6	19	83	10	62	63	4	8	23	1.40
1165610--1165648	5	8.2	5	94	5	64	20	0	0	79	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1165610--1165647	18	2.1	19	95	5	69	21	0	0	78	0.74
1168152--1168189	18	2.1	19	95	5	69	23	5	5	65	1.34
1180098--1180320	59	3.8	59	89	4	333	35	14	17	32	1.90
1180098--1180319	119	1.9	117	89	1	345	35	14	18	31	1.90
1180539--1180726	68	2.8	68	86	0	277	31	15	25	28	1.96
1180923--1180994	20	3.0	26	73	21	84	44	13	20	20	1.86
1180923--1181016	46	2.0	46	97	0	179	43	13	22	20	1.87
1180935--1181080	64	2.2	64	90	2	220	42	13	23	20	1.88
1181019--1181268	46	5.4	46	88	0	320	44	12	23	20	1.85
1181019--1181196	26	7.6	25	70	21	125	44	12	21	20	1.85
1180919--1181122	110	1.9	109	94	1	363	44	12	22	21	1.85
1184888--1184943	22	2.7	20	81	10	67	28	16	28	26	1.97
1184837--1185011	95	1.8	95	87	0	260	34	17	24	24	1.96
1185367--1185592	60	3.8	59	89	2	319	36	12	18	32	1.88
1185810--1185994	68	2.7	68	88	0	282	30	15	25	28	1.95
1186197--1186363	20	7.4	20	70	21	109	43	12	23	20	1.86
1186179--1186529	26	15.2	25	66	24	193	45	12	20	21	1.84
1186182--1186599	46	9.1	46	88	2	556	44	12	21	21	1.85
1186468--1186540	20	3.3	20	74	20	74	42	10	21	24	1.85
1190954--1191006	20	2.7	20	84	0	70	20	28	20	30	1.98
1192910--1192949	19	2.2	18	86	4	53	47	2	20	30	1.63
1194113--1194150	20	1.9	20	84	10	51	28	10	10	50	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1194374--1194434	23	2.8	22	85	11	81	26	37	16	19	1.93
1194473--1194524	20	2.6	20	90	0	77	19	28	21	30	1.97
1194420--1194580	73	2.2	73	90	4	261	22	28	18	29	1.98
1205916--1205956	18	2.2	19	83	12	50	51	9	4	34	1.56
1207367--1207427	24	2.5	24	79	12	63	18	0	24	57	1.40
1207401--1207434	14	2.2	16	90	10	54	17	0	20	61	1.34
1208091--1208140	18	2.8	18	96	0	91	22	28	22	28	1.99
1209388--1209442	12	5.0	11	74	14	51	45	0	0	54	0.99
1212377--1212436	18	3.3	18	80	0	66	21	21	16	40	1.92
1213486--1213511	13	2.0	13	100	0	52	84	0	0	15	0.62

Tables:   1   2   3   4   5   6   7