genome.fa.s8357.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008357.1 Hibiscus syriacus cultivar Beakdansim tig00111096_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1459476

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 750 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1215766--1215817	22	2.3	23	77	9	63	69	0	0	30	0.89
1216183--1216259	37	2.1	37	92	0	127	37	15	18	28	1.91
1216223--1216315	47	2.0	47	97	0	177	37	13	19	29	1.90
1216387--1216623	124	1.9	124	88	1	359	23	18	27	30	1.98
1216576--1216657	34	2.4	34	95	0	146	19	15	30	34	1.93
1219018--1219043	13	2.0	13	100	0	52	84	0	0	15	0.62
1220722--1220771	26	1.9	26	91	0	82	32	4	2	62	1.25
1220722--1220776	10	5.7	10	81	10	53	30	3	1	63	1.22
1220717--1220777	3	19.7	3	80	12	70	32	3	1	62	1.21
1222636--1222700	13	4.9	13	76	12	62	20	1	1	76	0.94
1222643--1222727	7	12.1	7	68	13	50	21	3	1	74	1.04
1222654--1222700	22	2.1	22	81	14	53	21	0	2	76	0.89
1222659--1222714	25	2.1	27	83	9	71	23	3	1	71	1.11
1226645--1227268	240	2.6	240	88	3	868	33	22	17	26	1.96
1227173--1227520	124	2.8	124	89	0	527	31	26	17	24	1.97
1227571--1228003	167	2.6	168	90	0	679	33	24	18	24	1.97
1227571--1228137	84	6.7	84	80	5	565	34	23	17	23	1.96
1228468--1228517	3	17.0	3	80	12	59	30	0	2	68	1.01
1228468--1228518	19	2.7	20	87	6	70	31	0	1	66	1.03
1230478--1230521	19	2.3	19	84	0	52	36	4	4	54	1.41
1231800--1231878	20	4.4	16	71	21	50	65	2	2	29	1.18
1233872--1234045	72	2.4	74	92	1	280	30	20	18	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1233879--1234045	74	2.3	72	92	2	271	30	20	19	29	1.97
1235795--1235833	9	4.8	9	81	18	50	12	10	0	76	1.01
1235797--1235833	8	4.8	8	81	18	51	10	10	0	78	0.97
1235799--1235831	15	2.3	15	94	5	59	12	12	0	75	1.04
1242920--1242984	26	2.5	26	83	14	73	66	0	3	30	1.07
1242918--1242982	24	2.7	24	77	15	71	64	0	4	30	1.14
1242920--1242998	26	3.0	26	80	14	67	63	0	6	30	1.19
1245172--1245243	3	24.0	3	91	5	110	63	0	0	36	0.94
1258299--1258365	27	2.6	25	79	9	71	13	8	2	74	1.17
1259056--1259097	19	2.2	19	91	8	68	30	0	28	40	1.57
1259192--1259236	13	3.4	13	80	17	56	44	8	0	46	1.34
1260784--1260852	13	5.0	13	76	13	50	43	2	4	49	1.37
1260771--1260832	15	4.1	14	75	22	54	43	4	1	50	1.33
1260808--1260863	25	2.4	23	85	8	69	44	5	7	42	1.54
1266954--1266979	8	3.2	8	100	0	52	11	0	0	88	0.52
1280240--1280328	24	3.7	24	92	0	142	25	19	21	33	1.97
1281184--1281239	27	2.0	27	82	3	67	42	5	1	50	1.35
1285802--1285989	58	3.2	58	96	0	349	33	20	12	33	1.90
1286355--1286391	19	1.9	19	88	0	56	27	27	13	32	1.94
1286416--1286464	20	2.5	20	90	6	73	20	26	14	38	1.91
1287397--1287495	49	2.0	48	98	1	189	40	2	16	41	1.59
1289189--1289586	108	3.7	108	76	4	327	28	16	23	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1290996--1291039	11	3.9	11	81	3	52	47	2	2	47	1.27
1291941--1291981	21	2.0	21	85	9	57	17	7	2	73	1.17
1292981--1293012	16	2.0	16	93	0	55	15	12	0	71	1.14
1294399--1294654	95	2.7	95	88	4	363	32	17	18	31	1.94
1295790--1296749	83	11.5	82	80	5	1005	33	23	18	23	1.97
1295794--1296749	251	3.8	252	86	2	1225	33	23	18	23	1.97
1295790--1296749	167	5.7	167	85	2	1149	33	23	18	23	1.97
1298240--1298283	12	3.7	12	79	8	54	15	4	2	77	1.04
1301570--1301635	33	2.1	31	83	8	80	36	22	15	25	1.93
1306353--1306415	33	2.0	31	84	9	83	38	25	14	22	1.92
1306906--1307113	108	1.9	108	87	0	299	25	20	21	33	1.97
1307930--1308048	50	2.4	50	91	4	188	28	10	22	38	1.87
1308686--1308946	41	6.4	40	73	13	131	30	18	14	35	1.92
1308682--1308907	82	2.8	82	81	6	219	29	19	16	34	1.94
1308709--1308907	82	2.4	81	85	2	256	29	19	16	35	1.93
1311127--1311445	41	7.8	41	82	1	336	26	19	17	36	1.94
1313280--1313338	21	2.8	21	92	0	91	20	8	22	49	1.75
1313903--1313953	21	2.4	21	84	12	61	68	1	7	21	1.25
1314125--1314161	2	18.5	2	100	0	74	51	0	0	48	1.00
1315472--1315703	105	2.2	107	87	1	324	21	17	25	35	1.95
1316114--1316241	31	3.9	31	72	17	82	33	12	21	32	1.90
1316028--1316208	67	2.6	68	81	4	213	37	11	20	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1316163--1316277	33	3.5	33	89	5	162	32	11	19	37	1.87
1316318--1316432	37	3.1	36	86	3	158	40	10	19	30	1.85
1316446--1316502	30	1.9	30	85	7	80	35	10	14	40	1.80
1316588--1316840	37	7.4	37	68	21	158	36	12	20	30	1.90
1316392--1316738	100	3.5	99	87	5	465	37	12	18	31	1.88
1316523--1316908	166	2.3	166	91	4	605	36	12	20	31	1.89
1316625--1316804	66	2.8	65	90	5	276	35	12	21	31	1.90
1316688--1316929	102	2.3	105	89	3	357	36	12	20	30	1.90
1318125--1318474	183	1.9	183	95	0	637	30	21	20	28	1.98
1322423--1322463	20	2.1	20	86	13	59	70	0	7	21	1.11
1322548--1322594	2	23.5	2	100	0	94	51	0	0	48	1.00
1322666--1322698	2	16.5	2	100	0	66	51	0	0	48	1.00
1324002--1324079	26	3.1	26	65	17	65	33	15	1	50	1.52
1328039--1328083	21	2.1	21	95	0	81	17	4	24	53	1.62
1328268--1328366	44	2.2	44	81	0	117	32	20	17	30	1.95
1329573--1329624	21	2.5	21	100	0	104	26	11	25	36	1.90
1331382--1331667	37	7.9	35	78	9	274	39	5	6	48	1.53
1331380--1331665	73	3.9	72	80	10	278	39	5	6	48	1.53
1332238--1332275	2	19.5	2	94	5	69	52	0	0	47	1.00
1332856--1333221	180	2.0	179	96	3	673	45	10	21	22	1.82
1343875--1343934	31	1.9	31	86	0	84	53	15	11	20	1.72
1346625--1346769	45	3.2	45	85	2	175	38	8	14	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1346893--1347238	58	6.0	57	82	6	376	38	6	10	44	1.65
1346909--1347238	114	2.9	114	83	3	392	38	6	10	44	1.64
1347145--1347238	31	3.2	31	62	17	72	36	4	9	50	1.55
1347173--1347352	92	2.0	87	82	5	216	36	3	11	48	1.57
1347286--1347474	39	4.9	39	76	9	181	37	4	13	44	1.64
1347287--1347430	77	1.9	77	82	7	184	36	4	13	45	1.64
1347403--1347669	97	2.7	98	83	1	331	38	7	11	42	1.69
1347491--1347569	39	2.0	39	87	4	115	35	10	11	43	1.75
1347598--1347728	39	3.4	39	84	1	165	41	8	10	39	1.70
1351901--1351947	21	2.2	21	84	3	58	46	34	0	19	1.50
1352918--1352978	26	2.3	27	80	2	70	54	1	0	44	1.10
1357565--1357607	18	2.4	18	82	14	54	39	11	25	23	1.88
1365174--1365206	13	2.5	14	85	14	52	66	0	15	18	1.25
1369621--1369767	72	2.0	72	97	0	276	25	19	22	32	1.97
1372294--1372323	13	2.3	13	100	0	60	23	30	16	30	1.96
1377007--1377033	14	1.9	14	100	0	54	85	0	0	14	0.61
1380351--1380399	20	2.5	20	96	0	89	20	16	30	32	1.94
1400346--1400396	27	1.9	27	88	4	77	43	5	11	39	1.66
1404633--1404669	2	18.5	2	100	0	74	0	48	0	51	1.00
1408217--1408255	17	2.3	17	86	0	60	58	0	0	41	0.98
1408554--1408618	3	23.3	3	77	17	61	70	1	1	26	1.04
1408553--1408618	11	6.0	11	78	15	66	71	1	1	25	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1408631--1408701	29	2.5	28	76	17	74	64	1	7	26	1.27
1409734--1409810	39	2.0	39	89	0	118	16	16	42	23	1.88
1410404--1410458	22	2.5	22	87	0	83	40	14	10	34	1.81
1410818--1410983	54	3.1	54	90	1	253	24	24	15	36	1.94
1413047--1413386	114	3.0	113	95	1	590	30	20	16	33	1.94
1421356--1421390	18	2.0	18	88	5	54	42	0	0	57	0.99
1421412--1421486	12	6.5	11	74	10	51	64	2	5	28	1.29
1422585--1422661	39	2.0	39	89	0	118	16	16	42	23	1.88
1428558--1428596	20	2.0	20	89	0	60	41	12	20	25	1.88
1428598--1428880	20	14.1	20	75	13	176	40	22	15	20	1.91

Tables:   1   2   3   4   5   6   7