genome.fa.s8360.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008360.1 Hibiscus syriacus cultivar Beakdansim tig00111099_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1563863

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 792 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282979--283069	20	4.5	20	82	8	121	23	18	29	28	1.98
283123--283168	19	2.4	19	85	3	56	21	17	30	30	1.96
283134--283170	19	1.9	19	94	0	65	21	16	29	32	1.95
286125--286185	23	2.8	22	92	7	106	31	16	32	19	1.94
287678--287722	17	2.6	17	96	0	81	26	6	15	51	1.68
290694--290779	4	21.2	4	70	15	52	75	0	6	17	1.01
290690--290777	30	3.0	29	73	15	90	76	0	7	15	1.01
290719--290760	18	2.3	18	88	8	59	80	0	4	14	0.86
290784--290819	2	18.0	2	100	0	72	50	0	0	50	1.00
290872--290937	29	2.3	29	76	2	71	72	6	0	21	1.05
291639--291743	37	2.8	37	83	9	133	30	14	15	40	1.87
292395--293903	106	14.3	106	91	1	2380	22	18	24	34	1.96
294706--294826	22	5.5	22	96	0	224	21	14	27	37	1.92
295222--295562	172	2.0	173	92	4	571	25	17	20	36	1.94
295641--295680	16	2.6	16	85	14	57	0	12	10	77	0.99
300210--300299	16	5.9	15	77	13	76	76	0	6	16	0.99
300243--300301	4	15.2	4	77	13	61	77	0	3	18	0.90
315017--315093	31	2.5	31	91	4	120	31	37	0	31	1.58
328667--329314	133	4.8	133	90	2	994	29	20	20	28	1.98
328643--329306	44	14.9	44	70	8	374	29	21	20	28	1.98
329571--329655	31	2.8	31	87	3	111	31	40	0	28	1.57
330775--330804	15	2.0	15	93	0	51	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332238--332305	32	2.2	32	86	2	93	17	16	35	30	1.92
332353--332498	46	3.2	46	85	0	193	16	13	26	43	1.85
333015--333055	16	2.6	15	81	11	55	17	14	19	48	1.81
333422--333472	26	2.0	26	84	0	66	43	3	3	49	1.39
340126--340164	19	1.9	19	85	10	51	5	28	7	58	1.47
349209--349246	19	2.0	20	89	5	60	7	23	0	68	1.16
352662--352690	13	2.1	14	93	6	51	75	6	17	0	1.01
354291--355459	106	11.0	106	92	1	1835	33	25	18	22	1.96
356212--356314	37	2.8	37	97	2	190	44	14	13	27	1.83
357175--357220	18	2.5	17	83	13	56	17	8	0	73	1.07
369004--369051	23	2.1	23	88	0	69	35	12	18	33	1.89
369527--369599	23	3.2	23	88	0	110	38	20	5	35	1.76
369809--369861	24	2.2	24	83	6	63	26	7	13	52	1.66
370001--370043	20	2.3	18	85	14	61	20	16	11	51	1.75
370006--370053	20	2.4	19	83	10	69	18	16	12	52	1.75
370186--370231	20	2.3	19	85	10	65	19	15	8	56	1.65
369973--370444	181	2.6	181	85	3	610	27	15	13	43	1.84
370993--371149	41	3.8	41	97	0	287	19	19	24	36	1.95
371038--371255	103	2.1	103	96	0	409	20	17	25	36	1.95
371141--371365	41	5.5	41	88	5	239	21	17	22	38	1.93
370997--371278	144	2.0	144	94	0	492	19	17	24	37	1.93
371287--371356	19	3.5	19	74	11	77	18	20	21	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370997--371337	144	2.4	144	86	4	422	19	17	24	37	1.93
371435--371466	6	5.5	6	96	3	57	31	53	15	0	1.43
371947--371994	5	9.6	5	100	0	96	0	39	20	39	1.53
376276--376587	155	2.0	155	99	0	615	27	14	23	33	1.94
378194--378231	2	19.0	2	100	0	76	50	0	0	50	1.00
381504--381594	5	18.0	5	77	15	71	72	2	5	19	1.15
381547--381592	24	1.9	24	86	0	65	73	0	8	17	1.07
381808--381889	2	41.5	2	95	2	148	50	0	1	48	1.08
381903--381951	14	3.6	14	77	5	55	77	0	4	18	0.92
381914--381954	22	1.9	21	95	5	73	80	0	2	17	0.82
381993--382043	23	2.2	23	82	6	59	76	0	1	21	0.88
381916--382039	14	8.1	16	69	19	70	69	0	3	26	1.09
382009--382039	5	6.0	5	96	3	53	77	0	0	22	0.77
381869--382064	96	2.0	99	81	8	233	65	2	4	27	1.25
383546--383584	13	3.2	12	86	10	53	76	2	5	15	1.06
383607--383944	35	9.6	35	73	18	208	44	6	3	45	1.46
383633--383890	35	7.6	34	81	11	223	44	5	4	46	1.46
383633--383890	107	2.5	102	82	13	286	44	5	4	46	1.46
383674--383945	36	7.6	34	74	17	184	43	6	4	46	1.47
384601--385074	84	5.7	82	81	7	557	23	20	25	29	1.99
384598--385074	165	2.9	164	84	4	634	24	20	25	29	1.99
388401--388445	19	2.4	19	92	3	74	66	6	13	13	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390126--390214	5	18.0	5	78	14	69	75	1	5	17	1.06
390167--390212	24	1.9	24	86	0	65	73	0	8	17	1.07
390467--390530	31	2.0	32	88	8	96	75	0	6	18	1.01
390483--390515	17	1.9	17	88	11	50	78	0	3	18	0.87
390464--390608	14	9.7	14	70	23	75	70	0	5	23	1.13
390463--390610	20	7.7	19	67	19	76	70	0	5	23	1.13
392349--392388	20	2.1	19	85	4	53	80	2	2	15	0.93
392376--392419	23	1.9	22	82	17	54	56	4	2	36	1.32
392437--392579	35	4.5	32	72	19	120	44	5	4	45	1.46
392499--392678	35	5.1	35	77	17	121	44	5	4	46	1.45
397971--398073	52	2.0	52	96	0	188	22	23	12	41	1.88
402551--402653	52	2.0	52	96	0	188	22	23	12	41	1.88
404128--404162	17	2.0	18	88	5	54	54	0	2	42	1.15
408842--408866	2	12.5	2	100	0	50	48	0	0	52	1.00
415244--415664	21	19.8	21	71	16	253	21	18	24	35	1.95
415242--415622	63	6.0	61	75	15	351	20	17	25	36	1.95
415284--415661	42	8.9	42	87	6	503	20	17	25	36	1.95
416508--416561	21	2.6	21	93	0	90	29	29	22	18	1.97
417609--417738	64	2.0	64	100	0	260	43	12	30	13	1.81
430307--430480	20	8.7	20	75	12	153	40	22	17	18	1.91
430590--430636	22	2.1	22	92	0	76	23	44	12	19	1.85
430999--431048	20	2.5	20	90	0	82	14	16	20	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430999--431055	20	2.8	20	86	0	60	15	15	19	49	1.80
433207--433319	21	5.4	21	86	4	147	22	40	20	16	1.91
433207--433339	42	3.2	42	82	3	133	21	39	21	18	1.92
434747--434835	27	3.1	27	73	17	88	28	1	15	55	1.48
434698--434835	60	2.2	61	84	7	181	31	1	14	52	1.51
435330--435365	18	2.0	18	94	0	63	16	2	25	55	1.55
442106--442186	21	3.8	20	76	15	65	24	35	24	14	1.94
445937--445973	18	2.1	18	89	0	56	51	10	5	32	1.60
446359--446408	25	2.0	25	92	0	82	44	20	8	28	1.79
446358--446407	14	3.8	13	72	17	50	44	22	8	26	1.80
448038--448230	97	2.0	98	94	1	343	40	21	12	24	1.88
448987--449011	3	8.3	3	100	0	50	0	36	0	64	0.94
450204--450251	20	2.5	19	86	3	60	31	12	22	33	1.91
450242--450408	20	8.4	20	80	5	203	19	12	25	43	1.86
450242--450428	100	1.9	100	96	0	347	19	13	24	42	1.87
450342--450428	40	2.2	40	85	8	115	20	14	24	40	1.90
450402--450448	20	2.3	20	96	0	85	21	19	25	34	1.96
450262--450449	60	3.1	60	79	11	172	20	14	24	40	1.90
450223--450449	100	2.3	100	88	3	343	21	13	24	40	1.89
450435--450489	20	2.8	19	70	8	56	25	14	32	27	1.95
451195--451349	77	2.0	77	91	1	247	35	21	25	18	1.95
457842--457887	20	2.3	20	88	3	67	28	17	36	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464137--464169	16	2.1	16	94	0	57	33	27	6	33	1.81
464598--464669	36	2.0	36	86	10	103	48	13	4	33	1.62
476783--476813	2	15.5	2	100	0	62	51	0	0	48	1.00
479695--480265	183	3.1	183	96	1	1038	33	17	14	35	1.90
480869--481829	200	4.7	200	76	13	1018	30	18	14	36	1.91
481353--481407	21	2.6	21	100	0	110	27	16	16	40	1.89
481153--481607	221	2.1	221	96	0	838	30	18	14	36	1.91
480953--481807	421	2.0	421	95	0	1539	31	18	14	36	1.91
482051--482111	19	3.3	18	88	2	59	52	11	1	34	1.47
482063--482111	19	2.6	19	96	0	89	55	10	2	32	1.45

Tables:   1   2   3   4   5   6   7