genome.fa.s8360.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008360.1 Hibiscus syriacus cultivar Beakdansim tig00111099_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1563863

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 792 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
484040--484086	20	2.4	19	79	10	58	19	14	10	55	1.68
484220--484266	20	2.4	19	79	10	58	21	17	8	53	1.70
484007--484478	180	2.6	181	89	0	685	26	16	13	42	1.86
484007--484493	182	2.7	181	85	4	644	27	17	13	42	1.86
489217--489246	15	2.0	15	100	0	60	33	13	20	33	1.91
490400--490448	25	2.0	25	100	0	98	16	24	26	32	1.96
493710--493762	21	2.5	20	75	18	54	66	5	0	28	1.15
502503--502747	36	6.5	38	80	11	231	42	4	6	45	1.52
502516--502780	111	2.4	106	80	13	288	43	4	6	45	1.51
502732--502813	33	2.5	33	92	4	130	43	2	6	47	1.41
502879--502908	15	1.9	16	93	6	53	26	3	3	66	1.23
502877--502945	19	3.6	18	81	15	68	27	7	1	63	1.29
506777--506815	21	1.9	21	89	5	62	33	23	25	17	1.96
513963--514007	17	2.6	17	100	0	90	8	24	48	17	1.75
514009--514077	19	3.7	18	90	5	102	28	30	27	13	1.94
514010--514077	28	2.4	28	83	11	77	29	30	26	13	1.94
514041--514098	19	2.9	21	87	7	77	32	25	25	15	1.95
514009--514097	9	9.3	9	80	11	88	30	28	26	14	1.95
515342--515392	23	2.3	22	79	3	57	31	0	13	54	1.39
521660--521730	33	2.1	35	84	10	94	32	4	1	61	1.23
521660--521730	34	2.1	34	84	10	92	32	4	1	61	1.23
522470--522496	4	6.8	4	100	0	54	25	0	0	74	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531320--531958	255	2.5	251	89	6	972	26	12	20	40	1.88
533342--533426	23	3.8	23	82	3	102	36	27	21	15	1.93
533338--533447	23	4.9	22	78	9	89	36	24	19	20	1.95
533335--533447	46	2.5	44	78	7	120	36	24	18	20	1.95
533342--533429	44	2.0	46	86	8	128	37	26	20	15	1.93
534706--534749	21	2.1	21	100	0	88	47	25	4	22	1.70
536546--536593	23	2.1	21	78	14	51	47	0	4	47	1.21
536567--536622	14	3.9	14	73	15	51	42	0	0	57	0.99
536588--536630	22	2.0	22	90	0	68	44	2	0	53	1.13
536556--536618	11	5.8	12	68	22	50	42	0	1	55	1.09
536574--536622	14	3.3	14	75	13	53	40	0	0	59	0.98
536673--536711	16	2.2	19	86	13	57	58	0	0	41	0.98
536687--536772	27	3.2	27	74	21	83	48	1	0	50	1.08
536680--536759	26	3.0	25	79	15	90	50	1	0	48	1.08
536826--536872	19	2.4	20	79	13	53	48	2	0	48	1.13
537510--537576	23	2.9	23	78	8	64	59	17	8	13	1.59
537740--537783	14	3.4	14	70	23	51	56	15	11	15	1.66
538816--538882	19	3.5	19	69	25	52	68	2	4	23	1.22
538816--538870	19	2.7	20	77	13	58	67	3	3	25	1.23
538977--539002	13	2.0	13	100	0	52	69	0	7	23	1.14
539032--539060	2	14.5	2	100	0	58	51	0	0	48	1.00
539029--539063	10	3.7	9	92	7	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
539102--539139	10	4.1	9	86	13	51	65	0	0	34	0.93
539102--539139	18	2.1	18	85	14	51	65	0	0	34	0.93
539551--539648	37	2.6	37	86	0	124	31	12	14	41	1.82
540404--541679	106	12.0	106	93	0	2054	22	17	25	34	1.96
542625--542680	22	2.5	22	94	0	103	26	12	25	35	1.91
543281--543318	13	2.8	14	88	11	53	2	13	7	76	1.11
543271--543355	35	2.4	35	80	16	95	1	16	7	75	1.08
543294--543367	21	3.4	21	76	22	80	0	14	8	77	0.99
546709--546745	19	1.9	19	89	10	58	67	0	24	8	1.17
548043--548113	31	2.3	29	78	21	74	69	2	4	23	1.20
548198--548223	13	2.0	13	100	0	52	69	0	7	23	1.14
548244--548292	21	2.2	21	82	10	53	61	0	4	34	1.15
548302--548348	22	2.0	24	88	8	71	72	0	2	25	0.96
554095--554157	29	2.2	28	83	5	81	36	7	3	52	1.47
554078--554164	31	2.9	30	82	6	95	37	9	3	49	1.52
554263--554324	31	2.0	31	90	0	97	35	8	0	56	1.29
554318--554393	30	2.5	30	86	0	98	40	11	0	47	1.40
554454--554542	28	3.1	27	78	15	92	35	2	0	61	1.08
554545--554727	29	6.4	29	83	9	234	54	0	9	35	1.34
570228--570277	25	2.0	25	96	0	91	50	0	0	50	1.00
570230--570284	25	2.2	25	86	3	74	52	0	0	47	1.00
571644--571766	45	2.7	45	84	0	138	38	7	20	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
571841--571932	23	4.0	24	77	2	73	17	18	25	39	1.92
581471--581551	33	2.4	33	89	2	126	13	8	35	41	1.75
581969--582002	15	2.3	15	89	0	50	82	8	0	8	0.85
582124--582176	18	3.0	17	78	8	52	26	24	9	39	1.86
582943--583053	54	2.1	54	92	0	186	36	11	25	26	1.90
583361--583394	2	18.0	2	88	11	54	52	0	0	47	1.00
583903--583961	12	5.0	12	77	4	57	27	1	3	67	1.16
584925--584979	2	28.0	2	96	3	103	49	0	0	50	1.00
589505--589535	15	2.1	15	93	0	53	54	12	3	29	1.53
591695--591731	20	1.9	19	89	10	58	45	10	24	18	1.81
592557--592628	36	2.0	36	83	8	92	48	1	4	45	1.30
600729--600753	12	2.1	12	100	0	50	20	16	24	40	1.91
608886--608923	17	2.2	18	85	4	51	28	0	2	68	1.03
608875--608924	19	2.6	19	80	17	59	28	0	2	70	0.99
610970--611026	21	2.7	21	86	0	87	28	24	26	21	1.99
611222--611276	13	4.2	13	75	13	58	49	12	3	34	1.59
611262--611359	33	3.0	32	85	11	137	44	15	6	33	1.71
617398--617434	2	18.5	2	100	0	74	51	0	0	48	1.00
617825--617906	38	2.1	39	84	2	103	36	24	21	17	1.94
620229--620316	30	2.9	31	87	3	124	23	17	21	37	1.94
622650--622680	2	16.0	2	93	6	55	51	0	0	48	1.00
624394--624846	55	8.4	55	84	4	550	26	18	19	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
625169--625208	18	2.2	19	86	4	55	30	17	15	37	1.90
633424--633626	99	2.0	101	91	8	335	29	31	18	21	1.97
641852--641892	20	2.0	20	100	0	82	9	29	4	56	1.53
647059--647118	31	1.9	30	83	10	75	13	35	6	45	1.70
647396--647441	16	2.6	18	83	16	69	60	0	0	39	0.97
650136--650182	2	24.5	2	85	8	62	55	0	0	44	0.99
655705--656022	42	7.8	41	78	10	298	28	20	18	32	1.96
656903--657008	54	2.0	52	94	5	187	33	11	15	39	1.83
660251--660603	43	8.2	43	93	0	564	24	26	20	27	1.99
672617--672683	21	3.2	21	74	14	66	25	22	35	16	1.94
673682--673707	2	13.0	2	100	0	52	50	0	0	50	1.00
674010--674453	154	2.9	148	79	9	419	50	7	15	26	1.69
674010--674453	152	2.9	149	76	10	421	50	7	15	26	1.69
675518--675590	28	2.6	28	93	4	121	30	6	6	56	1.52
675812--675843	16	2.0	16	93	0	55	37	15	9	37	1.80
678480--678517	18	2.1	18	95	0	67	15	7	42	34	1.76
678527--678964	239	1.9	230	88	7	666	28	14	17	39	1.89
679264--679310	18	2.6	18	89	0	76	31	31	2	34	1.70
684208--684262	20	2.7	20	85	2	74	40	5	14	40	1.69
684802--684835	13	2.6	13	100	0	68	50	0	0	50	1.00
684978--685119	73	1.9	72	80	10	164	37	16	20	26	1.93
685584--685635	20	2.6	20	96	0	95	38	26	13	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
685625--685723	21	4.8	20	72	6	72	36	23	19	21	1.95
685690--685883	20	9.6	20	81	5	221	35	25	19	19	1.95
685690--685883	60	3.2	60	83	0	253	35	25	19	19	1.95
686265--686335	33	2.2	33	89	0	106	11	21	18	49	1.78
686456--686510	14	3.6	14	73	21	56	40	23	27	9	1.85
686456--686526	33	2.2	33	92	0	115	42	25	23	8	1.82
686522--686619	19	5.7	19	70	22	81	11	23	22	42	1.85
686544--686633	14	5.7	14	72	23	72	10	24	23	42	1.84
686527--686641	33	3.5	33	92	0	203	10	23	20	45	1.82
688340--688719	185	2.0	186	99	0	753	22	12	18	46	1.83

Tables:   1   2   3   4   5   6   7