genome.fa.s8360.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008360.1 Hibiscus syriacus cultivar Beakdansim tig00111099_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1563863

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 792 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1450706--1450896	40	4.7	40	84	3	238	36	17	24	21	1.94
1450684--1450896	83	2.6	83	87	2	288	36	17	24	21	1.94
1454036--1454112	34	2.2	34	95	2	136	46	10	22	20	1.80
1466080--1466112	2	16.5	2	100	0	66	48	0	0	51	1.00
1486759--1487258	253	2.0	253	96	0	928	35	20	17	26	1.95
1488667--1488705	17	2.3	18	86	8	55	53	2	5	38	1.37
1489194--1489232	17	2.3	17	91	8	62	38	5	0	56	1.22
1490318--1490355	20	1.9	20	100	0	76	36	10	28	23	1.88
1490318--1490368	20	2.8	18	88	11	61	39	9	27	23	1.86
1492295--1492336	21	1.9	23	90	9	70	76	4	4	14	1.12
1492289--1492341	21	2.5	19	82	14	61	77	5	3	13	1.09
1499584--1499651	31	2.2	31	89	5	102	27	17	22	32	1.96
1500509--1500588	31	2.5	31	85	2	106	32	13	13	40	1.84
1504213--1504315	52	2.0	52	94	0	179	31	20	15	33	1.94
1505518--1505968	182	2.5	181	90	2	688	27	15	13	43	1.84
1505841--1506304	112	4.1	112	92	1	714	26	14	13	45	1.82
1505841--1506304	225	2.1	224	90	0	721	26	14	13	45	1.82
1513558--1513784	21	11.0	21	68	9	76	36	23	19	21	1.95
1513623--1513895	82	3.4	81	78	10	249	38	23	17	20	1.93
1513623--1513895	40	6.7	41	80	9	260	38	23	17	20	1.93
1513623--1513895	20	13.4	20	75	11	207	38	23	17	20	1.93
1514556--1514589	12	2.8	12	90	0	50	55	29	0	14	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1514715--1514768	24	2.2	24	90	0	81	22	18	18	40	1.91
1517273--1517471	19	11.4	19	70	21	150	44	18	21	15	1.86
1517240--1517484	33	7.2	33	83	7	276	44	19	21	14	1.86
1517362--1517484	14	7.7	14	69	25	68	47	17	22	12	1.81
1517621--1517657	14	2.6	14	91	0	65	45	21	0	32	1.52
1517624--1517800	83	2.1	84	96	2	331	42	18	2	36	1.65
1519089--1519177	42	2.1	42	81	8	101	20	19	35	24	1.95
1519647--1519704	14	3.8	14	77	20	62	46	20	22	10	1.81
1519629--1519704	33	2.3	33	95	0	134	46	21	22	10	1.81
1519605--1519690	19	4.7	19	73	16	83	47	19	20	11	1.81
1519678--1519717	14	2.9	14	84	0	53	47	22	17	12	1.81
1519647--1519736	47	1.9	47	86	0	126	46	23	20	10	1.80
1519705--1519742	19	2.0	19	94	0	67	47	28	15	7	1.74
1519770--1519826	14	3.7	14	77	20	60	10	22	21	45	1.82
1519765--1519844	33	2.4	33	93	0	142	10	22	21	46	1.81
1519783--1519868	19	4.7	19	75	16	83	11	20	19	47	1.81
1519995--1520187	95	2.1	92	91	2	305	46	17	12	22	1.82
1522257--1522351	20	4.7	20	75	10	75	21	17	25	35	1.95
1522318--1522370	20	2.7	20	91	5	81	15	16	22	45	1.85
1522378--1522435	19	2.9	20	79	7	64	20	17	18	43	1.89
1524150--1524190	2	20.5	2	100	0	82	51	0	48	0	1.00
1529678--1529758	3	26.7	3	79	7	83	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1531124--1531190	3	23.0	3	78	17	70	28	1	1	68	1.07
1531111--1531190	20	4.0	20	82	11	92	27	2	1	68	1.10
1531191--1531231	12	3.2	14	80	19	54	65	0	0	34	0.93
1531481--1531518	17	2.2	17	90	0	58	42	0	0	57	0.98
1532187--1532277	2	45.5	2	100	0	182	50	0	0	49	1.00
1532924--1532997	37	2.0	36	84	7	96	50	4	0	45	1.20
1535788--1535819	16	2.0	16	93	0	55	12	9	50	28	1.71
1536348--1536425	23	3.4	23	98	0	147	35	10	17	35	1.84
1536937--1537312	182	2.1	182	92	1	637	27	16	13	42	1.86
1537301--1537518	112	1.9	112	95	0	391	23	15	15	45	1.83
1537419--1537616	98	2.0	99	92	2	328	25	15	12	46	1.80
1537307--1537686	210	1.8	211	92	0	654	25	15	13	45	1.82
1545556--1545624	15	4.4	15	75	13	68	31	1	1	65	1.11
1545557--1545625	33	2.2	33	84	5	88	30	1	1	66	1.09
1553221--1553283	25	2.5	24	82	7	65	39	4	4	50	1.44
1556083--1556182	25	4.0	25	98	0	191	31	16	20	33	1.94
1557017--1557057	20	2.0	20	85	0	55	34	12	0	53	1.38
1557068--1557116	20	2.3	22	86	6	66	30	6	0	63	1.19
1557026--1557107	26	3.2	26	71	11	78	36	8	0	54	1.31
1557110--1557164	23	2.3	24	81	3	67	49	0	7	43	1.30
1557126--1557202	29	2.6	29	76	8	75	49	2	6	41	1.42
1557215--1557498	30	10.5	28	68	21	126	53	0	8	37	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1557347--1557376	15	2.0	15	100	0	60	60	0	6	33	1.23
1557299--1557516	76	2.8	75	74	14	217	53	0	8	37	1.32
1557369--1557449	25	3.0	24	82	15	81	46	0	11	41	1.39
1557399--1557492	25	3.8	23	77	13	73	54	0	9	36	1.33
1557369--1557504	55	2.5	54	77	9	141	51	0	9	38	1.35
1558534--1558586	24	2.2	24	93	0	88	26	15	24	33	1.95

Tables:   1   2   3   4   5   6   7

The End!