genome.fa.s8360.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008360.1 Hibiscus syriacus cultivar Beakdansim tig00111099_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1563863

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 792 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
927938--928031	33	2.8	33	91	0	143	8	37	27	26	1.85
927942--928062	10	11.5	10	70	10	80	9	33	30	26	1.87
927975--928062	20	4.2	20	83	8	104	9	31	32	26	1.87
928127--928227	29	3.4	29	90	1	139	12	22	40	23	1.89
930235--930382	64	2.3	64	75	13	144	35	20	18	25	1.96
930768--930848	29	2.8	29	96	3	146	44	16	22	17	1.86
930933--930966	15	2.3	15	89	0	50	17	17	32	32	1.94
931818--931872	26	2.1	26	96	0	101	32	38	12	16	1.86
933199--933251	2	27.5	2	92	7	92	52	0	0	47	1.00
933384--933419	3	12.0	3	93	0	63	63	0	2	33	1.08
936152--936176	2	12.5	2	100	0	50	52	0	0	48	1.00
936176--936203	2	14.0	2	100	0	56	50	0	50	0	1.00
938352--938461	29	3.9	29	96	2	197	20	45	26	8	1.78
938443--938575	32	4.4	32	77	12	104	21	51	16	11	1.75
938468--938577	28	3.7	30	78	9	118	22	49	17	10	1.78
939179--939226	20	2.3	21	82	7	62	31	0	16	52	1.45
939210--939265	28	1.9	28	89	7	85	32	0	12	55	1.37
942291--943057	60	13.2	59	88	8	1173	40	0	14	45	1.45
942520--942608	21	4.4	20	64	19	60	40	0	14	44	1.45
942291--943108	177	4.7	178	87	10	1190	39	0	14	45	1.44
942404--942607	11	17.6	11	68	21	71	39	0	14	45	1.45
942925--943009	11	7.6	11	74	20	61	40	0	15	44	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
942925--943009	21	3.9	21	69	19	66	40	0	15	44	1.46
943077--943123	14	3.6	14	75	18	57	34	0	17	48	1.47
943077--943124	24	2.0	25	91	4	80	35	0	16	47	1.47
943196--943222	7	3.9	7	100	0	54	55	14	14	14	1.70
943228--943469	11	20.5	11	67	22	52	42	1	9	46	1.46
943228--943272	22	2.2	22	84	11	60	48	2	4	44	1.35
943288--943433	26	5.9	26	72	13	112	42	2	9	45	1.48
943218--943433	96	2.2	96	94	4	373	42	1	10	45	1.48
943340--943382	16	2.6	17	82	14	54	39	0	11	48	1.40
943384--943427	14	3.3	13	81	12	54	45	2	6	45	1.42
943571--943635	14	5.2	13	75	17	50	38	7	7	46	1.61
943582--943615	11	3.2	11	83	8	52	38	8	5	47	1.59
943582--943625	21	2.1	21	86	0	61	40	9	4	45	1.56
943620--943651	16	1.9	17	93	6	57	37	6	9	46	1.61
945771--945801	15	2.1	14	94	5	53	54	6	0	38	1.26
945776--945822	16	3.0	16	84	9	53	59	10	0	29	1.31
945918--945970	12	4.3	12	84	11	63	52	16	0	30	1.44
945999--946128	42	3.0	42	75	15	104	48	11	0	40	1.39
946192--946230	16	2.3	18	86	8	55	56	5	0	38	1.22
946442--946548	49	2.2	49	91	6	175	22	18	38	20	1.94
946583--946677	29	3.3	29	95	0	163	23	32	30	13	1.93
946664--946735	32	2.2	32	90	0	117	8	30	30	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
947577--947691	60	1.9	60	82	3	142	42	4	21	31	1.72
949909--949937	2	14.5	2	100	0	58	0	48	0	51	1.00
950071--950108	3	12.7	3	100	0	76	31	0	0	68	0.90
963767--963833	30	2.2	30	100	0	134	47	8	19	23	1.77
969597--969834	119	2.0	119	100	0	476	20	26	19	33	1.96
970666--971034	20	18.5	20	85	4	458	34	26	18	20	1.96
971707--971753	24	2.0	24	87	8	69	25	14	21	38	1.92
971928--971952	12	2.1	12	100	0	50	72	0	28	0	0.86
974249--974555	19	17.4	19	78	17	351	47	17	20	14	1.83
974277--974555	52	5.2	52	89	8	347	47	16	20	15	1.83
974316--974555	71	3.4	71	82	13	348	47	17	20	15	1.82
974249--974587	142	2.4	137	90	6	506	46	17	20	15	1.83
974584--974685	19	5.6	19	85	12	151	14	23	17	44	1.86
974797--974833	14	2.6	14	91	0	65	45	21	0	32	1.52
974828--974900	12	6.0	12	67	20	53	57	16	1	24	1.47
974814--974886	38	1.9	38	97	0	137	53	16	1	28	1.51
976675--976739	18	3.4	19	87	10	89	46	26	16	10	1.80
976675--976798	19	7.1	19	72	22	101	46	23	18	11	1.81
976710--976798	33	2.7	32	91	5	151	47	21	20	11	1.81
976798--977168	174	2.1	172	92	6	608	45	19	12	22	1.84
976798--977168	87	4.3	85	88	10	501	45	19	12	22	1.84
978794--978883	14	5.7	14	74	23	81	42	23	25	8	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
978786--978900	33	3.5	33	95	0	212	45	20	24	9	1.81
978793--978905	19	6.8	18	72	23	88	43	22	24	9	1.83
978917--978971	14	3.6	14	73	21	56	9	27	23	40	1.85
979092--979162	33	2.2	33	92	0	115	47	18	22	11	1.80
979343--979397	22	2.5	22	81	0	74	20	16	40	23	1.91
979543--979736	20	9.6	20	82	5	221	19	19	25	35	1.95
979543--979736	60	3.2	60	83	0	253	19	19	25	35	1.95
979729--979805	21	3.7	20	70	13	57	27	16	23	32	1.96
979791--979842	20	2.6	20	96	0	95	21	13	26	38	1.90
986181--986208	2	14.0	2	100	0	56	50	0	0	50	1.00
988281--988320	20	2.0	21	85	14	57	42	5	7	45	1.54
988546--988586	19	2.3	19	87	8	59	24	29	17	29	1.97
988490--988696	65	3.2	63	84	7	238	31	24	16	28	1.96
988537--988700	65	2.5	65	87	1	240	31	25	15	28	1.96
994499--994623	23	5.6	23	69	13	100	28	24	18	28	1.98
994567--994643	20	3.7	20	71	10	73	31	25	19	23	1.98
994499--994643	43	3.3	43	91	1	209	28	25	18	26	1.98
995511--995550	20	2.0	21	85	14	57	42	5	7	45	1.54
995776--995816	19	2.3	19	87	8	59	24	29	17	29	1.97
995720--995926	65	3.2	63	83	8	231	30	23	16	28	1.97
997565--997651	35	2.5	34	77	18	90	55	8	8	28	1.58
999965--1000006	16	2.4	18	80	7	52	69	2	2	26	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
999968--1000006	17	2.3	18	82	13	55	66	2	2	28	1.18
1001400--1001476	22	3.4	22	87	7	109	40	2	11	45	1.54
1001400--1001476	24	3.4	23	87	10	106	40	2	11	45	1.54
1001444--1001543	52	1.9	52	89	4	157	36	4	12	48	1.59
1001483--1001517	18	2.0	18	94	5	63	34	2	11	51	1.53
1003408--1003446	21	1.9	21	89	5	62	35	0	0	64	0.94
1003421--1003450	13	2.2	14	94	5	53	30	0	0	70	0.88
1015677--1015909	116	2.0	115	86	6	332	58	5	6	29	1.47
1038029--1038129	50	2.0	50	100	0	202	39	13	9	36	1.79
1042457--1042518	27	2.2	29	91	8	101	38	24	8	29	1.84
1050148--1050184	20	1.9	19	89	10	58	45	10	24	18	1.81
1054952--1055107	60	2.6	59	81	6	170	30	21	5	42	1.76
1055818--1055870	2	26.5	2	100	0	106	50	0	0	49	1.00
1071393--1071435	11	3.8	11	81	6	59	46	16	9	27	1.77
1071549--1071694	34	4.4	33	74	8	93	52	8	4	34	1.52
1075020--1076069	284	3.7	281	81	7	957	23	32	19	24	1.97
1075606--1076108	136	3.7	135	86	2	625	23	34	18	22	1.96
1075606--1076108	272	1.8	272	84	5	694	23	34	18	22	1.96
1078257--1078291	16	2.1	18	89	10	56	68	2	0	28	1.04
1089428--1089516	44	2.0	45	86	4	126	26	15	16	40	1.89
1093073--1093130	31	2.0	28	90	10	89	32	27	20	18	1.97
1093076--1093146	36	2.0	36	83	5	90	30	29	19	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1097524--1097576	25	2.1	25	89	0	79	54	5	15	24	1.62
1098976--1099038	24	2.6	24	89	0	99	31	14	30	23	1.94
1100055--1100083	3	9.7	3	100	0	58	65	0	0	34	0.93
1107052--1107088	17	2.1	19	85	10	51	35	10	5	48	1.61
1107826--1107891	29	2.2	29	83	8	78	37	6	0	56	1.24
1112623--1112712	27	3.3	27	96	0	162	45	11	22	21	1.82
1114479--1114524	24	2.0	23	95	4	83	26	6	2	65	1.28
1121150--1121183	2	17.5	2	93	6	61	47	0	0	52	1.00
1123917--1123951	6	5.8	6	96	0	61	17	54	17	11	1.71
1130831--1130908	15	5.3	15	86	3	106	53	0	1	44	1.08

Tables:   1   2   3   4   5   6   7