genome.fa.s8423.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008423.1 Hibiscus syriacus cultivar Beakdansim tig00111206_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1633377

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 890 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
455759--455822	28	2.3	27	81	10	74	18	12	12	56	1.67
461126--461174	22	2.2	22	85	7	64	32	2	6	59	1.34
462724--462881	21	7.8	20	72	7	86	38	25	17	18	1.92
462848--463097	20	12.5	20	81	6	229	37	24	17	20	1.93
463780--463826	24	2.0	24	87	8	69	25	14	21	38	1.92
464001--464025	12	2.1	12	100	0	50	72	0	28	0	0.86
466361--466458	19	5.4	19	82	13	134	15	22	16	45	1.84
466342--466458	53	2.2	53	96	1	218	14	23	17	44	1.85
466517--466678	33	4.7	33	75	16	159	45	17	22	14	1.85
466517--466684	19	9.6	19	76	18	177	44	17	23	14	1.86
466517--466684	52	3.2	52	97	0	309	44	17	23	14	1.86
466693--466790	19	5.4	19	84	13	143	14	22	17	45	1.84
466674--466790	53	2.2	53	96	1	218	13	24	17	43	1.86
466897--466933	14	2.6	14	91	0	65	45	21	0	32	1.52
468410--468499	14	5.7	14	74	23	81	42	23	25	8	1.83
468402--468516	33	3.5	33	95	0	212	45	20	24	9	1.81
468409--468521	19	6.8	18	72	23	88	43	22	24	9	1.83
468533--468589	14	3.7	14	75	20	60	8	24	22	43	1.81
468517--468597	33	2.5	33	95	0	144	8	22	22	46	1.78
468574--468649	21	3.7	21	83	3	109	11	25	17	46	1.82
468573--468650	41	1.9	41	97	0	147	12	25	16	44	1.83
468729--468799	33	2.2	33	89	0	106	47	16	23	11	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469181--469374	20	9.6	20	82	5	221	19	19	25	35	1.95
469181--469374	60	3.2	60	83	0	253	19	19	25	35	1.95
469361--469443	21	4.0	21	73	6	78	25	16	24	33	1.96
469341--469439	42	2.4	43	77	11	100	21	18	23	37	1.94
469614--469653	21	2.0	20	85	5	53	72	2	10	15	1.21
470765--470836	21	3.4	21	75	11	58	56	2	0	40	1.13
471447--471546	45	2.2	45	90	0	173	52	14	11	23	1.73
474806--474857	12	4.4	12	72	13	54	76	1	1	19	0.97
476096--476143	13	3.7	13	86	5	62	83	6	0	10	0.81
476102--476148	14	3.4	14	79	5	51	82	6	0	10	0.82
476096--476149	10	5.5	10	77	14	51	83	5	0	11	0.80
476220--476396	37	4.7	38	79	12	181	40	6	4	49	1.48
476220--476397	75	2.4	73	84	8	209	39	6	4	49	1.48
481849--481912	23	2.8	23	80	4	76	37	25	21	15	1.93
485084--485144	23	2.7	23	81	0	77	16	26	26	31	1.96
488586--488649	19	3.4	19	100	0	128	26	15	31	26	1.96
495173--495208	17	2.1	17	89	0	54	52	5	5	36	1.48
496661--496692	9	3.4	9	91	8	55	56	0	0	43	0.99
496663--496692	10	3.1	10	90	9	53	60	0	0	40	0.97
501799--501941	58	2.5	56	83	4	196	44	5	8	41	1.58
502058--502121	22	2.9	22	95	2	110	46	7	15	29	1.74
505259--505561	158	1.9	158	84	4	405	35	4	35	25	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506143--506390	22	11.5	22	74	18	159	37	8	2	50	1.47
506230--506272	23	1.9	22	86	13	61	44	11	0	44	1.40
506143--506385	7	33.9	7	67	21	87	37	9	2	51	1.47
506428--506478	20	2.5	20	81	15	68	43	13	1	41	1.55
509537--509588	16	3.2	17	72	22	58	42	1	17	38	1.60
510699--510757	29	2.0	29	96	0	109	30	6	32	30	1.83
513159--513207	24	2.0	24	84	0	62	59	6	2	32	1.34
514826--514907	43	1.9	43	89	0	128	21	3	17	57	1.55
515045--515075	16	1.9	16	93	0	53	41	16	25	16	1.88
516007--516060	20	2.7	20	85	0	72	72	1	7	18	1.17
516015--516060	5	9.2	5	90	0	65	73	2	4	19	1.10
517962--518115	3	49.0	3	77	13	141	59	1	1	36	1.20
517962--518115	13	12.5	13	74	15	132	59	1	1	36	1.20
517962--518115	16	10.0	16	74	16	139	59	1	1	36	1.20
518584--518630	20	2.3	20	96	0	85	29	8	25	36	1.86
525316--525342	2	13.5	2	100	0	54	51	0	0	48	1.00
525504--525542	13	3.0	13	88	0	60	33	10	23	33	1.88
526517--526553	18	2.1	18	90	5	58	21	37	13	27	1.91
529515--529572	23	2.5	23	91	0	89	18	22	29	29	1.98
534503--534547	21	2.1	21	100	0	90	31	26	17	24	1.97
535286--535340	20	2.8	19	94	2	92	21	30	16	30	1.95
544535--544580	21	2.2	21	84	7	58	69	2	10	17	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544584--544635	26	2.0	26	85	7	70	51	1	3	42	1.31
546543--546692	3	48.0	3	70	15	81	56	2	4	37	1.32
546544--546692	13	11.4	13	69	11	74	55	2	4	37	1.33
546590--546627	20	1.9	20	89	10	60	52	2	5	39	1.38
546543--546688	16	9.7	15	69	18	81	55	2	4	37	1.33
546644--546692	19	2.6	19	83	0	71	57	2	2	38	1.22
546968--547135	2	83.0	2	72	19	109	39	0	7	51	1.35
546968--547134	31	5.7	29	74	16	123	40	0	7	51	1.35
546998--547200	76	2.7	72	77	14	171	37	0	6	54	1.33
547170--547233	15	4.5	15	75	13	55	35	4	3	56	1.36
547183--547241	3	19.7	3	81	6	66	37	3	1	57	1.25
547158--547241	30	2.6	32	76	12	82	34	3	2	59	1.28
546971--547239	12	22.7	12	70	20	103	37	1	6	54	1.37
549529--549602	38	2.0	37	84	7	96	33	5	36	24	1.78
557905--557946	22	2.0	22	90	4	68	40	7	11	40	1.69
580398--580518	59	2.1	59	85	0	161	27	14	19	38	1.90
582271--582359	36	2.5	36	94	0	151	30	30	15	23	1.96
586721--586763	22	2.0	22	90	4	70	41	2	0	55	1.12
586721--586773	23	2.4	22	84	9	63	41	1	1	54	1.22
589564--589605	17	2.4	17	80	11	50	61	0	28	9	1.27
594071--594243	36	4.8	36	83	2	222	43	13	13	28	1.83
598156--598197	17	2.4	17	80	11	50	61	0	28	9	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
600261--600298	19	2.0	19	89	0	58	42	23	5	28	1.76
600612--600700	33	2.7	33	71	13	83	25	1	24	48	1.58
600707--600780	21	3.6	19	75	12	58	62	0	1	36	1.04
600723--600782	6	11.0	6	73	20	51	60	0	0	40	0.97
600722--600791	21	3.3	20	76	9	77	60	0	0	40	0.97
600723--600782	12	5.0	12	81	0	57	60	0	0	40	0.97
600735--600778	15	2.9	15	100	0	88	65	0	0	34	0.93
600839--601008	85	2.0	84	93	1	286	47	12	15	24	1.80
601006--601039	16	2.1	16	94	0	59	58	8	5	26	1.51
601398--601441	19	2.3	19	88	7	63	70	9	4	15	1.30
601453--601505	27	2.0	25	82	13	63	33	5	0	60	1.20
603043--603095	15	3.5	15	75	14	63	58	1	0	39	1.09
605198--605344	21	6.9	21	73	6	98	23	15	24	36	1.94
605198--605290	42	2.2	42	86	0	132	21	13	25	38	1.91
605547--605691	71	2.0	71	98	0	281	28	8	17	44	1.78
605955--605995	17	2.3	18	79	8	57	39	7	17	36	1.77
619257--619424	21	7.9	21	80	4	158	22	15	26	35	1.94
619257--619420	42	3.9	42	78	3	175	21	15	26	36	1.93
619299--619427	65	2.0	65	84	3	170	21	15	27	35	1.94
623084--623197	20	5.7	20	82	6	104	30	25	18	25	1.98
623081--623197	61	1.9	61	83	0	153	32	24	17	24	1.97
623750--623794	18	2.4	19	85	7	65	48	26	15	8	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
623797--623953	19	8.7	19	72	16	118	15	23	17	43	1.87
623835--623927	33	2.8	33	86	1	114	16	24	19	39	1.91
623890--623953	20	3.1	21	78	12	62	15	25	14	45	1.83
626045--626208	42	3.9	42	78	0	184	22	37	17	22	1.94
626112--626227	21	5.5	21	66	8	56	23	33	20	22	1.97
626042--626217	84	2.1	84	97	0	334	22	37	17	23	1.94
626042--626247	42	4.9	42	72	5	148	22	35	17	23	1.95
626042--626247	84	2.5	84	91	1	288	22	35	17	23	1.95
627593--627628	14	2.6	14	95	0	63	30	0	25	44	1.54
627753--627809	14	3.7	14	75	20	60	43	22	24	8	1.81

Tables:   1   2   3   4   5   6   7   8