genome.fa.s8423.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008423.1 Hibiscus syriacus cultivar Beakdansim tig00111206_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1633377

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 890 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1292707--1292903	23	8.4	23	70	18	113	54	1	7	36	1.37
1292797--1292858	27	2.3	27	94	0	106	50	3	4	41	1.40
1292889--1293179	20	13.9	20	67	23	133	37	7	3	52	1.45
1293023--1293075	27	1.9	27	88	11	81	35	7	3	52	1.48
1293023--1293101	28	2.8	28	78	21	78	37	7	2	51	1.44
1293092--1293178	2	43.0	2	72	15	63	42	4	1	51	1.29
1293210--1293242	13	2.3	15	90	10	52	39	3	3	54	1.31
1293303--1293341	17	2.3	17	90	0	60	38	2	2	56	1.27
1293473--1293635	2	83.0	2	67	19	85	45	2	3	48	1.33
1293429--1293487	23	2.8	20	74	10	55	37	6	10	45	1.65
1293492--1293632	11	13.9	10	69	18	69	45	2	3	48	1.31
1293474--1293567	29	3.2	28	81	12	100	47	2	3	46	1.30
1293541--1293635	9	10.6	9	72	20	58	43	2	3	51	1.29
1295177--1295464	80	3.6	80	89	0	434	30	25	20	23	1.99
1299638--1299678	21	1.9	22	85	5	57	51	12	7	29	1.66
1303446--1303521	23	3.3	23	83	9	102	27	6	14	51	1.67
1303813--1303849	16	2.3	16	90	0	56	29	0	8	62	1.24
1310081--1310165	5	17.0	5	70	4	64	22	8	1	68	1.23
1310101--1310178	15	5.3	14	74	7	57	23	7	0	69	1.14
1311243--1311336	34	2.9	33	87	7	131	25	14	22	37	1.93
1313263--1313314	25	2.1	25	85	7	70	23	26	11	38	1.89
1320399--1320435	16	2.2	17	90	4	58	67	8	0	24	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1326784--1326816	17	1.9	17	93	0	57	39	0	30	30	1.57
1328833--1328883	22	2.3	22	93	0	84	25	19	23	31	1.98
1331530--1331576	17	2.7	18	77	12	53	51	2	4	42	1.33
1331575--1331666	14	6.3	15	70	16	68	38	11	0	50	1.40
1331587--1331640	22	2.5	22	84	0	63	35	14	0	50	1.44
1331646--1331685	19	2.1	19	85	0	53	42	2	5	50	1.37
1332654--1332691	2	19.5	2	94	5	69	50	0	0	50	1.00
1332752--1332785	14	2.4	14	90	0	50	47	11	0	41	1.40
1333238--1333288	20	2.5	20	78	15	59	45	1	9	43	1.48
1333316--1333427	11	10.2	11	72	22	69	50	1	8	39	1.42
1331686--1333341	577	2.9	576	84	6	1928	48	5	12	33	1.65
1333279--1333698	44	9.8	42	72	19	164	51	2	6	39	1.39
1333325--1333403	25	3.2	24	79	15	81	49	1	10	39	1.45
1333494--1333586	22	4.2	24	75	18	80	54	1	10	33	1.42
1333494--1333650	8	21.4	8	77	19	91	54	0	7	38	1.32
1333581--1333956	2	192.0	2	72	20	244	42	4	2	50	1.34
1333555--1333963	31	12.5	33	72	20	201	43	4	2	49	1.37
1333749--1334028	22	12.6	22	70	17	111	38	7	2	50	1.46
1333991--1334030	15	2.7	15	88	7	55	32	5	2	60	1.32
1334082--1334226	26	6.0	25	68	21	78	45	4	2	47	1.35
1334266--1334428	2	83.0	2	66	21	78	45	2	4	47	1.35
1334222--1334280	23	2.8	20	74	10	55	37	6	10	45	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1334285--1334425	11	13.9	10	68	18	60	45	2	4	48	1.34
1334267--1334360	29	3.2	28	81	12	100	47	2	3	46	1.30
1334334--1334428	9	9.6	9	71	20	57	43	2	4	50	1.33
1335947--1336238	80	3.7	80	90	0	442	30	25	21	22	1.99
1335939--1336238	160	1.9	160	90	2	487	32	24	21	22	1.98
1344144--1344218	23	3.3	23	88	5	116	28	6	16	49	1.70
1344515--1344646	43	3.3	42	63	23	104	31	0	10	56	1.39
1344516--1344629	19	6.0	19	70	15	58	29	0	12	57	1.41
1344510--1344699	76	2.6	76	85	7	250	31	0	11	56	1.39
1350853--1350902	21	2.4	21	86	0	73	16	8	2	74	1.15
1350853--1350903	11	4.8	11	80	7	61	15	7	1	74	1.13
1352583--1352620	19	2.0	19	89	0	58	31	0	13	55	1.38
1352582--1352712	43	3.3	42	65	24	102	30	0	11	57	1.39
1353431--1353478	16	2.8	19	79	20	61	20	4	0	75	0.97
1359475--1359507	17	1.9	17	93	0	57	54	6	0	39	1.25
1360580--1360604	2	12.5	2	100	0	50	48	0	0	52	1.00
1366263--1366325	21	3.0	21	81	4	74	31	14	20	33	1.92
1368159--1368210	24	2.2	24	92	0	86	13	7	36	42	1.73
1368159--1368210	12	4.3	12	73	9	52	13	7	36	42	1.73
1370035--1370059	13	1.9	13	100	0	50	16	44	24	16	1.86
1370062--1370122	29	2.1	29	90	0	95	27	8	26	37	1.85
1370164--1370232	29	2.4	29	85	0	84	31	2	15	49	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1384986--1385046	25	2.5	25	85	15	76	68	4	11	14	1.35
1385319--1385370	22	2.4	22	100	0	104	19	26	28	25	1.98
1386984--1387015	3	10.7	3	100	0	64	34	0	0	65	0.93
1387787--1387827	21	1.9	22	85	5	57	51	12	7	29	1.66
1388079--1388104	13	2.0	13	100	0	52	23	15	30	30	1.95
1390100--1390146	21	2.2	21	84	0	58	21	23	14	40	1.90
1391955--1392002	19	2.5	19	83	12	55	72	4	6	16	1.20
1391966--1392019	25	2.2	24	83	9	65	68	3	9	18	1.32
1392103--1392155	24	2.4	22	77	22	58	58	13	5	22	1.56
1395833--1395871	3	13.0	3	94	0	69	64	0	0	35	0.94
1396650--1396690	21	1.9	22	85	5	57	51	12	7	29	1.66
1401335--1401374	20	2.0	20	95	0	71	35	12	25	27	1.92
1413196--1413259	23	2.8	23	76	9	76	40	40	17	1	1.59
1416689--1416995	106	2.9	106	83	3	368	25	17	14	42	1.87
1419793--1419886	27	3.5	27	85	0	116	22	6	24	46	1.75
1420666--1420702	19	1.9	19	88	0	56	21	29	21	27	1.99
1422799--1422847	26	1.9	25	83	4	62	32	40	2	24	1.67
1429331--1429437	29	3.7	29	85	0	151	46	17	11	24	1.81
1436821--1436928	29	3.7	30	83	9	125	50	20	8	21	1.74
1436938--1437002	17	4.0	17	73	17	57	16	20	44	18	1.87
1436948--1437014	13	4.8	13	75	13	62	16	20	44	17	1.86
1436937--1437006	30	2.3	30	92	0	113	17	20	45	17	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1447702--1447737	18	2.1	17	94	5	63	16	47	25	11	1.79
1447748--1447858	29	3.8	29	93	0	186	23	8	23	45	1.79
1447748--1447879	58	2.3	58	86	2	185	24	7	23	44	1.79
1449910--1449951	12	3.6	12	93	3	68	19	0	16	64	1.30
1451588--1451630	21	2.0	21	100	0	86	48	9	4	37	1.56
1460050--1460088	21	1.9	20	84	5	51	41	28	10	20	1.85
1462804--1463248	20	19.6	20	65	23	138	43	12	22	21	1.86
1462745--1463354	46	13.3	46	84	2	760	44	12	20	22	1.84
1465044--1465083	21	1.9	21	85	10	55	30	22	27	20	1.98
1465244--1465726	20	21.2	20	64	23	124	43	12	21	21	1.86
1465243--1465832	46	12.8	46	84	3	758	44	12	21	22	1.85
1467721--1468218	46	10.8	46	88	1	712	42	11	22	22	1.86
1472616--1472646	12	2.6	12	100	0	62	35	25	19	19	1.95
1475239--1475263	13	1.9	13	100	0	50	72	4	0	24	1.02
1476357--1476402	13	3.6	13	77	13	51	0	13	6	80	0.89
1495785--1495833	19	2.6	18	81	9	62	20	4	2	73	1.10
1501312--1501376	15	4.4	15	73	9	62	21	9	0	69	1.16
1501312--1501376	5	13.2	5	82	9	53	21	9	0	69	1.16
1503759--1503801	19	2.3	19	88	4	61	20	4	0	74	1.00
1504377--1504405	14	2.0	15	93	6	51	34	3	27	34	1.74
1509824--1509892	34	2.0	34	97	0	129	36	27	10	26	1.88
1511909--1512181	135	2.0	135	86	2	377	30	20	19	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1515163--1515196	15	2.3	15	100	0	68	35	8	11	44	1.72
1525173--1525298	46	2.8	45	74	12	121	42	5	20	30	1.75
1534696--1535305	46	13.3	46	84	1	765	43	12	21	22	1.85
1534709--1535109	20	17.7	20	65	22	120	43	11	22	22	1.86
1534866--1535178	26	13.4	25	65	23	130	43	11	23	21	1.85
1536980--1537020	21	2.0	21	85	9	57	29	21	26	21	1.99
1542003--1542457	46	9.9	46	89	1	680	43	12	22	21	1.86
1548490--1548525	19	2.0	19	89	10	58	61	2	5	30	1.33
1550217--1550267	19	2.7	19	80	14	61	0	11	5	82	0.83
1570094--1570192	33	3.0	33	90	1	162	23	15	23	38	1.92

Tables:   1   2   3   4   5   6   7   8