Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008423.1 Hibiscus syriacus cultivar Beakdansim tig00111206_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1633377

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 890 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1574853--1574947
33
2.8
33
87
6
138
26
15
21
36
1.93
1581564--1581615
25
2.1
25
82
7
61
25
25
11
38
1.89
1584118--1584143
5
5.2
5
100
0
52
0
19
0
80
0.71
1590304--1590343
5
8.2
5
89
10
57
0
15
2
82
0.77
1592094--1592144
22
2.3
22
89
0
75
27
17
23
31
1.97
1593912--1593960
3
16.0
3
95
4
89
32
0
0
67
0.91
1594854--1594945
14
6.3
15
70
16
59
38
11
1
48
1.47
1594925--1594964
19
2.1
19
85
0
53
42
2
5
50
1.37
1595033--1595078
24
1.9
24
86
8
67
50
0
10
39
1.38
1595932--1595994
25
2.5
25
78
14
67
41
0
12
46
1.42
1595940--1596009
20
3.4
21
73
15
65
40
1
14
44
1.54
1596029--1596067
20
2.0
20
89
0
60
46
12
0
41
1.42
1594965--1596599
589
2.9
567
87
5
2301
47
5
12
33
1.65
1596519--1597268
2
377.0
2
64
23
135
44
4
4
45
1.45
1596613--1596664
23
2.3
23
82
0
59
48
3
11
36
1.58
1596602--1596726
37
3.6
36
74
16
95
51
2
8
37
1.46
1596660--1596742
11
7.8
12
70
24
62
51
1
7
39
1.37
1596761--1596835
13
5.4
14
73
19
59
54
2
5
37
1.37
1596958--1597171
119
1.8
115
81
11
263
36
6
2
54
1.39
1597037--1597259
84
2.7
81
74
17
213
37
5
2
54
1.39
1597332--1597362
15
2.1
15
93
0
53
41
6
3
48
1.45
1597337--1597382
22
2.0
23
87
4
67
34
6
2
56
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1597438--1597539
26
3.9
25
72
16
73
44
4
2
48
1.39
1597513--1597561
21
2.4
22
76
13
59
48
4
4
42
1.40
1597546--1597614
11
6.5
11
74
15
56
46
5
2
44
1.42
1597631--1597795
2
83.0
2
67
18
87
45
2
3
48
1.33
1597713--1597737
5
5.0
5
100
0
50
60
0
0
40
0.97
1597733--1597791
11
5.5
11
86
8
68
38
3
5
52
1.40
1599328--1599623
80
3.7
80
91
1
443
30
26
21
21
1.98
1604226--1604269
17
2.7
17
82
6
56
47
11
6
34
1.66
1605363--1605461
33
3.0
33
91
1
155
45
16
7
31
1.74
1607884--1607922
19
2.0
20
90
5
62
43
20
15
20
1.88
1611545--1611619
23
3.3
23
88
5
116
28
6
16
49
1.70
1611910--1611966
25
2.3
24
93
3
96
28
0
15
56
1.40
1612725--1612765
19
2.2
19
86
8
57
19
7
0
73
1.07
1618194--1618252
5
11.8
5
72
13
50
15
6
1
76
1.07
1618202--1618252
11
4.8
11
80
7
61
15
7
1
74
1.13
1618202--1618252
16
3.2
16
77
2
50
15
7
1
74
1.13
1618188--1618242
21
2.9
18
84
12
74
14
9
3
72
1.23
1618202--1618251
21
2.4
21
86
0
73
16
8
2
74
1.15
1618194--1618254
11
5.5
11
75
11
52
16
6
1
75
1.09
1618261--1618303
14
2.9
15
82
6
52
16
6
0
76
0.99
1619955--1619992
19
2.0
19
89
0
58
31
0
13
55
1.38
1619954--1620084
43
3.3
42
65
24
102
30
0
11
57
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1620803--1620855
16
3.2
18
78
21
62
22
3
0
73
0.99
1620806--1620855
19
2.5
20
84
12
68
22
4
0
74
0.99
1623253--1623314
28
2.2
29
82
2
72
30
4
19
45
1.71
1623325--1623416
29
3.2
27
80
7
94
35
2
13
48
1.54
1631190--1631227
20
1.9
20
88
0
58
26
36
26
10
1.89
1631584--1631633
26
2.0
26
84
11
68
52
4
6
38
1.45

Tables:   1   2   3   4   5   6   7   8

The End!