genome.fa.s8423.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008423.1 Hibiscus syriacus cultivar Beakdansim tig00111206_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1633377

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 890 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
813195--813324	24	5.4	24	93	0	206	17	21	5	55	1.62
821145--821455	157	2.0	156	90	3	491	41	9	18	30	1.82
823809--823987	45	4.0	45	84	2	218	40	7	21	31	1.80
825025--825070	20	2.2	22	81	11	62	47	4	17	30	1.67
826810--826879	23	3.1	22	78	8	70	78	4	12	4	1.04
831001--831075	25	3.2	25	61	24	63	36	8	25	30	1.85
830965--831143	45	4.0	45	87	2	236	38	7	22	31	1.83
831496--831520	12	2.1	12	100	0	50	24	16	24	36	1.94
833678--833855	45	4.0	45	91	2	288	37	7	22	32	1.82
834156--834294	65	2.2	65	96	1	253	30	4	21	43	1.72
835171--835213	20	2.2	20	91	0	68	34	20	11	32	1.89
836028--836107	23	3.4	23	79	5	81	20	20	22	37	1.94
836028--836129	23	4.3	24	78	10	72	21	20	20	37	1.95
837177--837204	14	2.0	14	100	0	56	64	14	0	21	1.29
838816--838859	23	1.9	23	85	0	61	47	2	9	40	1.48
844185--844228	21	2.1	21	82	0	52	9	38	15	36	1.80
845308--845509	65	3.1	63	82	10	230	31	24	18	26	1.97
845481--845529	19	2.6	19	84	9	57	24	28	20	26	1.99
846267--846309	23	2.0	21	86	13	61	55	2	0	41	1.12
846309--846337	6	4.8	6	100	0	58	17	0	0	82	0.66
847018--847048	2	15.5	2	93	0	53	54	0	45	0	0.99
847011--847042	14	2.3	14	94	0	55	59	0	40	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
847011--847048	12	3.2	12	92	0	58	57	0	42	0	0.98
857292--857323	16	2.0	16	100	0	64	37	31	25	6	1.81
859012--859057	21	2.2	21	100	0	92	41	8	4	45	1.55
862011--862069	25	2.2	25	82	11	64	57	8	6	27	1.53
862735--862790	29	1.9	29	92	0	94	60	3	16	19	1.49
863146--863208	23	2.8	21	77	13	54	42	3	0	53	1.16
865570--865642	36	2.0	36	94	0	128	43	8	19	28	1.79
869946--869977	16	2.1	15	94	5	55	59	6	15	18	1.57
870160--870341	30	6.0	29	82	6	161	63	5	12	18	1.47
870172--870341	31	5.6	29	83	5	153	62	4	12	19	1.47
870172--870341	61	2.8	61	83	3	207	62	4	12	19	1.47
871735--871773	3	13.3	3	89	5	62	64	2	0	33	1.08
874750--874783	2	17.0	2	100	0	68	50	0	0	50	1.00
877911--877970	3	20.0	3	93	6	104	66	0	0	33	0.92
878643--878729	43	2.0	43	86	0	120	25	19	28	26	1.99
880695--880733	13	3.2	13	79	20	57	0	20	0	79	0.73
883320--883353	16	2.1	16	100	0	68	26	5	44	23	1.76
884563--884625	20	3.1	20	93	4	108	14	28	39	17	1.89
884563--884625	21	3.0	21	95	2	110	14	28	39	17	1.89
886046--886095	19	2.5	20	83	3	66	32	10	6	52	1.59
886953--887022	34	2.1	32	86	5	95	22	30	15	31	1.95
887370--887473	21	4.9	21	87	5	147	15	28	36	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
887370--887473	42	2.5	42	92	4	165	15	28	36	19	1.92
887370--887482	41	2.7	40	86	6	102	17	28	34	19	1.95
890929--890971	18	2.3	19	84	4	52	55	0	2	41	1.12
892042--892080	3	13.0	3	100	0	78	66	0	33	0	0.92
897227--897267	14	3.1	14	86	6	50	70	0	0	29	0.87
899671--900037	131	2.8	131	90	0	574	39	17	12	30	1.87
900493--900535	16	2.5	17	81	7	52	69	4	2	23	1.18
902607--902654	20	2.6	18	83	6	51	37	12	22	27	1.90
903436--903797	44	8.0	44	87	2	397	40	13	20	25	1.89
903436--903757	89	3.6	88	83	5	380	41	13	20	25	1.88
903436--903797	133	2.7	131	84	6	404	40	13	20	25	1.89
903621--903796	48	3.8	48	86	5	220	38	15	21	24	1.92
903459--903796	89	3.7	92	83	7	302	39	13	21	25	1.90
909015--909063	22	2.2	22	96	0	89	42	16	6	34	1.73
912080--912120	21	2.0	21	85	0	55	14	7	2	75	1.12
914800--914842	20	2.2	20	86	0	59	34	9	20	34	1.85
915116--915192	30	2.6	30	91	0	127	23	25	12	37	1.91
919361--919409	22	2.2	22	96	0	89	42	16	6	34	1.73
927193--927225	16	2.1	16	94	0	57	33	6	33	27	1.81
932640--932868	44	5.2	44	87	1	309	44	12	18	25	1.84
932640--932916	132	2.1	132	84	7	355	43	12	18	25	1.85
932837--932944	48	2.2	48	86	0	144	38	15	19	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
937447--937523	6	12.8	6	100	0	154	50	15	0	33	1.44
941487--941855	131	2.8	131	92	0	603	38	15	12	33	1.85
942690--942751	25	2.6	25	87	10	85	19	4	4	70	1.23
942705--942750	11	3.8	12	82	11	58	19	2	4	73	1.10
948456--948632	90	2.0	89	94	1	309	37	11	6	45	1.65
954506--954557	25	2.2	23	86	6	68	19	5	1	73	1.14
956956--957026	3	24.0	3	97	2	135	66	0	0	33	0.92
960869--960915	21	2.3	20	82	13	60	17	14	0	68	1.22
962083--962153	3	24.0	3	97	2	135	33	0	0	66	0.92
969769--969863	44	2.2	42	85	10	122	24	20	26	29	1.99
969769--969863	21	4.4	21	81	9	104	24	20	26	29	1.99
976483--976536	28	2.0	27	88	3	81	18	20	5	55	1.62
976461--976540	6	11.1	7	71	23	51	17	17	8	56	1.65
976479--976540	14	4.5	14	79	2	63	17	19	8	54	1.67
979071--979236	89	1.9	89	90	0	269	35	18	11	34	1.87
981315--981737	123	3.5	123	82	1	458	41	15	17	25	1.89
981869--981933	3	21.7	3	85	6	87	30	1	0	67	1.00
983131--983171	22	1.9	21	90	5	64	24	7	7	60	1.48
987220--987248	14	2.0	15	93	6	51	75	0	0	24	0.80
988776--988891	40	2.8	42	85	3	146	25	16	26	31	1.96
990659--990770	54	2.1	54	84	3	145	39	23	10	26	1.87
992046--992112	28	2.4	28	80	2	91	22	5	32	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
992854--992951	11	9.5	11	74	14	86	1	23	1	74	0.94
992853--992905	10	5.3	10	80	11	56	0	20	0	79	0.74
992853--992961	20	5.5	19	79	17	98	1	22	0	75	0.96
992853--992994	9	15.1	9	71	12	81	2	21	0	76	0.94
996127--996162	14	2.6	14	90	0	54	58	2	13	25	1.49
999442--999591	77	1.9	77	100	0	300	40	8	28	23	1.82
1002227--1002369	60	2.4	60	85	5	182	32	20	16	30	1.95
1012641--1012735	23	4.2	21	73	15	66	15	23	24	36	1.94
1012651--1012735	23	3.7	23	85	1	118	14	24	27	34	1.94
1013075--1013112	18	2.1	18	85	9	51	31	7	15	44	1.75
1013589--1013646	2	29.0	2	100	0	116	50	0	0	50	1.00
1014162--1014193	14	2.3	14	94	0	55	53	9	0	37	1.34
1020142--1020479	49	6.9	49	76	0	334	34	13	21	30	1.92
1020482--1020734	46	5.5	46	83	0	301	43	13	19	23	1.86
1025254--1025305	8	6.5	8	100	0	104	51	0	48	0	1.00
1026417--1026572	49	3.2	48	82	5	208	33	16	23	26	1.95
1026585--1026673	46	1.9	46	90	0	142	41	12	20	25	1.87
1026643--1026703	14	4.0	16	70	21	51	47	9	19	22	1.79
1026602--1026749	76	1.9	76	94	0	260	42	12	21	23	1.86
1026678--1026805	46	2.8	46	86	0	175	43	12	21	22	1.86
1026778--1026831	28	1.9	28	100	0	108	50	7	14	27	1.70
1027328--1027378	26	2.0	25	82	14	61	31	1	3	62	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1029463--1029910	55	8.2	55	84	4	568	39	18	14	27	1.90
1029463--1029903	217	2.0	219	86	3	611	39	18	14	27	1.90
1031940--1031965	12	2.2	12	100	0	52	0	38	34	26	1.57
1033600--1033636	19	1.9	19	88	0	56	13	27	35	24	1.93
1037507--1037546	21	1.9	21	85	10	55	35	10	2	52	1.48
1039525--1039580	22	2.5	22	97	0	103	19	19	42	17	1.89
1047317--1047652	55	6.1	55	87	4	473	40	19	14	25	1.90
1047317--1047652	164	2.0	164	90	1	521	40	19	14	25	1.90
1047340--1047678	109	3.1	109	80	10	388	40	18	14	26	1.89
1050783--1050887	36	2.9	36	94	0	183	39	28	10	21	1.87

Tables:   1   2   3   4   5   6   7   8