genome.fa.s8423.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008423.1 Hibiscus syriacus cultivar Beakdansim tig00111206_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1633377

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 890 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
627735--627824	33	2.7	33	94	0	153	43	21	22	13	1.87
627735--627795	19	3.5	19	74	21	69	44	21	22	11	1.84
627824--627950	33	3.9	32	83	8	157	17	22	17	43	1.88
627817--627940	66	1.9	66	94	0	221	17	22	16	42	1.89
630247--630273	12	2.2	12	100	0	54	0	25	0	74	0.83
630448--630501	24	2.2	24	90	0	81	40	20	16	22	1.91
631364--631413	20	2.5	20	80	0	73	38	22	18	22	1.94
631627--631694	20	3.4	20	70	8	66	39	22	20	17	1.92
631611--631714	40	2.9	34	76	15	100	40	21	22	16	1.91
631721--631788	19	3.8	19	85	12	92	13	20	17	48	1.80
631927--631961	14	2.5	14	85	0	52	48	20	0	31	1.50
633811--633908	19	5.3	19	74	15	80	45	22	17	14	1.84
633827--633940	19	6.5	19	70	20	97	47	20	18	14	1.82
633866--633956	14	5.9	14	72	20	74	48	21	17	12	1.80
633850--633954	33	3.2	33	95	1	194	47	20	18	13	1.82
633850--633972	65	1.9	66	89	5	196	47	21	17	13	1.82
633968--634083	19	6.6	19	72	17	83	13	20	21	43	1.86
633990--634047	14	3.9	14	77	16	62	10	15	24	50	1.75
633973--634063	32	2.8	33	93	3	157	12	17	21	48	1.80
634048--634091	20	2.2	20	92	4	72	20	25	18	36	1.95
634572--634616	18	2.5	18	88	0	72	13	15	44	26	1.83
635936--635994	20	3.0	20	87	0	73	42	22	18	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
636257--636300	22	2.0	22	90	0	70	20	15	43	20	1.88
636489--636540	20	2.6	20	93	0	86	25	21	28	25	1.99
636549--636600	20	2.6	20	90	0	77	25	15	25	34	1.95
636474--636592	61	2.0	61	84	0	157	23	15	25	35	1.95
636468--636605	61	2.3	61	78	5	152	22	16	24	36	1.94
636673--636713	21	2.0	21	85	0	55	34	29	17	19	1.94
639078--639118	19	2.2	19	86	8	57	56	2	7	34	1.40
639351--639444	29	3.3	28	81	10	127	27	7	6	58	1.50
639352--639446	30	3.2	29	81	11	113	27	7	6	58	1.49
643321--643443	60	2.1	59	87	1	174	40	2	20	36	1.66
643377--643593	111	2.0	111	92	1	364	39	4	16	39	1.69
644460--644539	39	2.0	40	85	2	108	40	2	5	52	1.37
645560--645608	23	2.1	23	85	7	64	42	8	14	34	1.75
645532--645697	87	1.9	87	89	0	260	42	11	13	31	1.80
645568--645796	110	2.1	110	89	0	350	41	9	14	34	1.78
645647--645711	23	2.8	23	95	0	112	35	10	18	35	1.86
646188--646633	110	4.0	111	91	2	684	44	11	11	32	1.76
646175--646633	221	2.1	222	90	2	737	44	11	11	32	1.76
646667--647037	111	3.3	111	90	1	539	43	12	12	31	1.79
646396--646893	272	1.8	271	92	1	854	45	11	12	30	1.77
647349--647388	21	1.9	21	85	10	55	37	27	5	30	1.78
647473--647839	111	3.3	112	88	3	510	42	11	11	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646618--648124	802	1.9	803	92	0	2572	42	10	10	36	1.74
649167--649239	31	2.4	31	79	4	76	41	2	21	34	1.68
650154--650457	85	3.6	84	89	4	434	30	20	17	31	1.95
650151--650494	85	4.1	83	84	7	381	30	20	17	31	1.95
650514--650572	2	29.5	2	89	0	91	50	0	1	47	1.11
656769--656808	20	2.0	20	90	0	62	20	35	25	20	1.96
656812--656851	21	1.9	21	85	10	55	25	37	25	12	1.91
659464--659513	22	2.3	22	100	0	100	16	42	24	18	1.89
670566--670605	14	2.9	14	84	0	53	47	0	2	50	1.14
670566--670640	15	5.0	15	73	20	59	45	0	1	53	1.08
676355--676393	6	6.3	6	88	5	51	17	12	12	56	1.67
676354--676393	13	3.2	13	85	7	55	17	12	12	57	1.65
679605--679894	125	2.3	125	88	0	418	32	16	27	23	1.96
681108--681209	42	2.5	41	81	1	123	24	23	21	30	1.99
680666--681233	212	2.6	216	91	2	937	32	17	19	30	1.95
681144--681332	99	1.9	99	93	0	324	25	20	23	31	1.98
681607--681651	14	3.2	13	82	17	54	51	0	0	48	1.00
681606--681666	17	3.7	17	73	20	58	49	0	0	50	1.00
681612--681663	20	2.5	20	81	3	68	46	0	0	53	1.00
687445--687497	22	2.4	22	100	0	106	35	18	11	33	1.87
690217--690264	13	3.8	12	86	10	60	81	0	10	8	0.88
692072--692115	19	2.3	20	80	11	56	59	0	4	36	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
693376--693425	17	3.2	17	72	21	63	18	44	24	14	1.86
693381--693416	13	2.8	13	87	4	56	16	44	25	13	1.85
693434--693570	57	2.4	58	91	3	215	24	7	20	48	1.75
693434--693572	29	4.8	29	88	1	199	24	7	20	47	1.76
693528--693613	29	3.0	29	80	0	82	30	6	20	41	1.79
700809--700843	17	2.0	17	94	5	61	17	48	22	11	1.79
700851--700989	29	4.8	29	88	0	208	23	8	23	45	1.80
700851--701010	58	2.8	58	85	2	162	24	8	22	45	1.79
705821--706217	196	2.0	197	91	2	638	46	12	12	28	1.77
716147--716177	14	2.2	14	100	0	62	61	0	0	38	0.96
718171--718213	20	2.2	20	91	0	68	32	11	20	34	1.89
719615--719656	22	2.0	22	86	9	61	28	40	2	28	1.69
723504--723734	107	2.1	107	78	6	243	51	17	15	15	1.76
724642--724684	22	2.0	22	95	0	77	4	6	48	39	1.51
724890--725380	135	3.6	135	83	4	598	27	19	17	34	1.95
725587--725809	116	1.9	116	87	0	329	26	21	13	39	1.90
725700--726315	135	4.6	136	84	2	776	29	21	14	34	1.93
727337--727380	7	6.0	7	81	7	52	2	18	0	79	0.83
727336--727380	21	2.1	21	88	8	65	2	20	0	77	0.87
740438--740540	51	2.1	46	86	10	143	45	3	2	47	1.36
740491--740596	38	2.7	39	80	11	128	42	8	3	45	1.52
740557--740608	24	2.2	24	92	0	86	36	5	5	51	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747391--747436	3	15.0	3	90	4	74	30	0	2	67	1.03
748914--748959	2	23.0	2	86	0	65	45	2	2	50	1.26
748918--748964	16	2.9	16	90	0	67	42	2	4	51	1.33
749010--749049	19	2.2	18	86	4	53	30	10	0	60	1.30
751518--751559	19	2.2	19	86	0	57	19	14	11	54	1.70
752871--752906	17	2.1	18	89	5	56	66	5	19	8	1.38
753805--753861	23	2.4	23	85	8	71	36	10	3	49	1.55
754663--754792	38	3.5	37	84	10	167	30	20	10	38	1.86
754532--754948	172	2.4	172	83	7	495	31	17	12	37	1.88
754837--754946	36	3.1	35	84	6	141	33	17	12	36	1.88
754984--755042	31	1.9	31	96	3	111	30	13	13	42	1.83
755114--755239	64	2.0	64	88	3	191	27	9	15	46	1.77
755110--755293	64	2.8	64	82	4	183	32	9	14	43	1.77
755295--755461	30	5.6	29	81	9	147	32	12	11	43	1.79
755312--755456	30	4.8	29	85	7	166	30	10	13	45	1.77
755345--755456	59	1.9	59	88	3	172	30	7	14	48	1.70
755400--755615	91	2.3	93	83	5	285	29	10	13	45	1.78
755492--755557	29	2.3	29	84	5	80	30	10	12	46	1.75
755828--756182	134	2.7	133	86	1	494	25	30	18	24	1.98
757854--757888	16	2.2	16	89	0	52	17	11	5	65	1.43
757968--757992	2	12.5	2	100	0	50	48	0	0	52	1.00
758043--758082	19	2.2	18	86	4	53	30	10	0	60	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
769780--769810	16	1.9	16	93	0	53	32	16	19	32	1.94
789694--789895	59	3.4	59	89	0	296	31	19	13	35	1.90
795629--795677	25	1.9	26	84	12	66	79	4	14	2	0.97
799823--799852	15	2.0	15	93	0	51	40	3	0	56	1.16
807479--807549	34	2.1	34	100	0	142	36	16	12	33	1.87
807651--807693	8	5.2	8	77	5	50	4	13	0	81	0.84
807658--807693	16	2.3	16	90	4	56	5	13	0	80	0.88
807652--807695	23	1.9	23	86	9	63	6	13	0	79	0.92
809334--809380	20	2.3	22	75	10	55	29	14	4	51	1.62
810462--810640	45	4.0	45	88	2	279	32	21	7	39	1.81

Tables:   1   2   3   4   5   6   7   8